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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0390400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:15637867:15642502:1 gene:Os03g0390400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytochrome c oxidase subunit VIb-1 description:Similar to Cytochrome c oxidase subunit 6b. (Os03t0390400-01)
Sequence

ATGGCCGCCGAAGCCAAGGCCCCGTCGCTCGCCGAGGAATACTCACTTCCTCCACAGGAA
GCCCCAGTTGAAAAGGCAGTTGAGGATAAGCCCCAGGAGGCTGAAAGTATCTCTGTAACG
AATGATGAAACCCCTCAAGCTGATGAGACTGCAACAGCTGTGGAAGTGAACCCTGAAACT
TCTGAAGTGCAAGAAGTTGCTGACAAGTCAGAAGTTGAAGACACCAACCCTGCAGCAGAG
GAAACGAATGAGACTGCTGAGGAAGAGGCTGAGGAGAAACCAGAGATTAAGATCGAAACG
GCTCCAGCAGATTTCCGTTTCCCAACAACAAATCAAACAAGGCACTGTTTCACACGCTAT
GTTGAGTATCACAGGTGCGTAGCTGCGAAAGGGGAGGATGCTCCTGAGTGTGATAAGTTT
GCAAAATACTATCGATCTCTTTGCCCAGGCGAATGGGTTGAGCGTTGGAATGAGCAACGG
GAAAACGGCACCTTCCCTGGACCTCTGTAA

Peptide Sequence

PEP ID

Os03t0390400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:15637867:15642502:1 gene:Os03g0390400 transcript:Os03t0390400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytochrome c oxidase subunit VIb-1 description:Similar to Cytochrome c oxidase subunit 6b. (Os03t0390400-01)
Sequence

MAAEAKAPSLAEEYSLPPQEAPVEKAVEDKPQEAESISVTNDETPQADETATAVEVNPET
SEVQEVADKSEVEDTNPAAEETNETAEEEAEEKPEIKIETAPADFRFPTTNQTRHCFTRY
VEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFPGPL

Transcript Sequence

Transcript ID

Os03t0390400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15637867:15642502:1 gene:Os03g0390400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytochrome c oxidase subunit VIb-1 description:Similar to Cytochrome c oxidase subunit 6b. (Os03t0390400-01)
Sequence

ATTATCGCCTCCCTGCTCGCCCTCCTCCCACTCTCTCGCCGCCGCCGCCACTTCTAGAAG
CTTCCATCGCCACCACCGCAGCGCCCCGCGCCGCCATGGCCGCCGAAGCCAAGGCCCCGT
CGCTCGCCGAGGAATACTCACTTCCTCCACAGGAAGCCCCAGTTGAAAAGGCAGTTGAGG
ATAAGCCCCAGGAGGCTGAAAGTATCTCTGTAACGAATGATGAAACCCCTCAAGCTGATG
AGACTGCAACAGCTGTGGAAGTGAACCCTGAAACTTCTGAAGTGCAAGAAGTTGCTGACA
AGTCAGAAGTTGAAGACACCAACCCTGCAGCAGAGGAAACGAATGAGACTGCTGAGGAAG
AGGCTGAGGAGAAACCAGAGATTAAGATCGAAACGGCTCCAGCAGATTTCCGTTTCCCAA
CAACAAATCAAACAAGGCACTGTTTCACACGCTATGTTGAGTATCACAGGTGCGTAGCTG
CGAAAGGGGAGGATGCTCCTGAGTGTGATAAGTTTGCAAAATACTATCGATCTCTTTGCC
CAGGCGAATGGGTTGAGCGTTGGAATGAGCAACGGGAAAACGGCACCTTCCCTGGACCTC
TGTAAGCATGTGCAAAGGGGAGAACATACGTTGTTGTCCGGGCTCTCTTCGTTGGTAACT
GGCGTCATGTTATCAGAATCGGAGGGATCGTCCTTTTTTTTGGAGAGATTTACAAATAAG
AGATTTCTTTTTTTATTTGAAGAATGACATCTGTTGACTCTACCTAAACGATCATCCTCT
GCACTGCTGAGAAACTCACATTACAGCTATGATCTTCCTCCCTTGACTGATCTTCCATAA
CTGTTTTCTCAGGATAATGTGGTTGCTCGCTTGGGAAAATGTGTTG