Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0390000-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:15622204:15624515:-1 gene:Os03g0390000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os03t0390000-02)
Sequence

ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGAC
GACCAGAAGCTCCGGGCATTTTATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCT
CTTGGCGAAGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGT
TTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGT
ACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGT
GGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGAT
AATGACCTTCCTGGCTTGACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCA
TCTAAGATCAGGAAGCTGTTTAACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAAC
ACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATC
CAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAG
CAAAGAATTGCCAAGAAGAAGTCCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGG
CTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCT
GCTGCCACCACCGCATAA

Peptide Sequence

PEP ID

Os03t0390000-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:15622204:15624515:-1 gene:Os03g0390000 transcript:Os03t0390000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os03t0390000-02)
Sequence

MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD
NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI
QRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLS
AATTA

Transcript Sequence

Transcript ID

Os03t0390000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15622204:15624515:-1 gene:Os03g0390000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os03t0390000-02)
Sequence

GAGCGAACCCTAGCCCTAGCGCCGCCGCCGCCGCCGCCATGAAGTTCAACATCGCCAACC
CGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTCCGGGCATTTT
ATGACAAGAGGATCTCCCAGGAAGTCAGTGGTGATGCTCTTGGCGAAGAATTCAAGGGCT
ATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGC
TTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGGTACCCCCTGCTTCCGTGGATATG
GCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATC
TCTCTGTTATCAACTTGGTGATTGTAAAGAAGGGTGATAATGACCTTCCTGGCTTGACTG
ACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCATCTAAGATCAGGAAGCTGTTTA
ACCTTGCCAAGGATGATGATGTCCGCAAGTATGTCAACACTTACCGCAGAACCTTCACTA
CCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGA
CTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGT
CCGAGGCTGCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCA
GGAGTGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTGCTGCCACCACCGCATAAGACC
CCTATAAGACCTTAAAACATTATAGATGAGGAAGTGTTTGTCGTTGTGATGGATAGACAT
GGTGCTGCTAGTTTTTCTTCGGTAATTGGAGCAGTTTTCTGTGGACAAGATGATGCTTTG
TCACAATTTTTGAGCACTTGCAGTTGCTATGTATTCTGATGATATAACTTGTGCCTACTA
TTTTCTTGGTTTTTGTGTCATTTGATGTCTCGTAATATCTCTCTCCTTGACTGTTTT