Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0388000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:15475307:15478270:-1 gene:Os03g0388000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Splicing factor SC35. (Os03t0388000-01);Hypothetical conserved gene. (Os03t0388000-02)
Sequence

ATGTCGCGCCTCGGCCGCTACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTC
CTCAACGTCTCCTTCCGCACGACGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGC
GAGGTCCTCGACATCCGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCG
TTCGTGAGGTACAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGG
ACGGTGGATGGGAGGGATATCATGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGA
ATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCT
AGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGG
GACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAG
AGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGC
CCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCT
CGAAGCCCTTTGACCTAG

Peptide Sequence

PEP ID

Os03t0388000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:15475307:15478270:-1 gene:Os03g0388000 transcript:Os03t0388000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Splicing factor SC35. (Os03t0388000-01);Hypothetical conserved gene. (Os03t0388000-02)
Sequence

MSRLGRYGPPAVRDSYSLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFA
FVRYKYEDEAQKAVDKLDGRTVDGRDIMVQFAKYGPNAERIHKGRIVEEISKPRGRSRSP
SPKRRYRADYRDRGYRDDYRDRHYRDDYQDREYRRSRSIERYERERYQEKGYRRRSRSIS
PDYDRRHRKNGPRDERSPRSRSPLT

Transcript Sequence

Transcript ID

Os03t0388000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15475307:15478270:-1 gene:Os03g0388000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Splicing factor SC35. (Os03t0388000-01);Hypothetical conserved gene. (Os03t0388000-02)
Sequence

AACGAAAGCGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCGCCAC
CGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGCTACG
GCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAACGTCTCCTTCCGCACGA
CGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATCCGCATCC
CCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCGTTCGTGAGGTACAAGTACGAGG
ACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGGACGGTGGATGGGAGGGATATCA
TGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGAATTCATAAGGGGAGGATTGTAG
AAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTG
CTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACTATCGTGATGACT
ATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATC
AAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATC
GCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGA
ATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCT
TGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAA
GGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTT
TTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTATTTTTTCCCTCAATTGAGTGCT
TATTATAGACTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTA
TGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATG
ATGATTTTGGTGATTCTGAGGC