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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0387800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:15460811:15463109:1 gene:Os03g0387800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os03t0387800-01)
Sequence

ATGGAGCGGCCGGCGCCGGTGAGGAAGTCCCACACCTCGACGGCCGACCTCCTCGCCTGG
CCGCAGCAGCAGCACCAGCCCGACGGCCACGCCGCCTCCACCCCCTCCCCCGCTCGCCGC
CCCCACCAGCCATCGGAGGCGCTGAGGAAGGTGGTGTTCGGTGGCCAGGTCACGGAGGAG
GAGGCCGAGAGCCTCAACAAGAGGAAGCCATGCTCCGCGCCCAAGTGGAAGGAGATGACC
GGGAGCGGCATCTTCGCGGCCGGCGCCGACGGGGAGGCGGAGGAGCCCGGCAGCGCCGCC
GCGCCCGGCCGCGCCGCCCCGCGCAATTACCAGCCAGTTACTGTGAGCCACATTTCATTT
GCTGAGGATGGAAGTGTTCCTCCCAAAAAGCCAACTTCAGTGGCTGAGGTAGCAAAGCAG
CGTGAGCTTAGCGGTACTCTGCAAAGTGAAGCAGACAGTAAGATGAAGAAGCAGATTTCA
AATGCAAAATCAAAGGAACTCAGTGGCCATGGCCTTTTTGACCCTCAAGATGTAAGGCCT
AATGGGGCAAGGAACACAGCAAATGGCACCGGTGCCTCACACACACCTGTGAGAAATGCA
AATGTGAGCAGCTTCTCGTTTGGGGAGGCCAACACTGACAGCGTGACGAAAACTGCAAAG
AAGATAACTGGCAAGAAATTCACCGATCTCACAGGCAACAACATATTCAAAGGAGACGAG
GCCCCTGCTTCTGCGGAGAAGCATCTGAGCACCGCGAAGCTGAAAGAAATGACTGGGAGC
AACATATTCGCGGAAGGACAGGCGCCAACCCGAGAGTATCATAGCGGGAACCGCAAGCCT
CCTGGCGGCGAGAGCAGCATTGCGCTGGTTTAG

Peptide Sequence

PEP ID

Os03t0387800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:15460811:15463109:1 gene:Os03g0387800 transcript:Os03t0387800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os03t0387800-01)
Sequence

MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE
EAESLNKRKPCSAPKWKEMTGSGIFAAGADGEAEEPGSAAAPGRAAPRNYQPVTVSHISF
AEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRP
NGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNIFKGDE
APASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV

Transcript Sequence

Transcript ID

Os03t0387800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15460811:15463109:1 gene:Os03g0387800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os03t0387800-01)
Sequence

ACAACAACGCCTATAGTCTAGTAGAGCCTAGAGAGAGAAAGCGCGAGGAGAGGAGAGGAG
ATGGAGCGGCCGGCGCCGGTGAGGAAGTCCCACACCTCGACGGCCGACCTCCTCGCCTGG
CCGCAGCAGCAGCACCAGCCCGACGGCCACGCCGCCTCCACCCCCTCCCCCGCTCGCCGC
CCCCACCAGCCATCGGAGGCGCTGAGGAAGGTGGTGTTCGGTGGCCAGGTCACGGAGGAG
GAGGCCGAGAGCCTCAACAAGAGGAAGCCATGCTCCGCGCCCAAGTGGAAGGAGATGACC
GGGAGCGGCATCTTCGCGGCCGGCGCCGACGGGGAGGCGGAGGAGCCCGGCAGCGCCGCC
GCGCCCGGCCGCGCCGCCCCGCGCAATTACCAGCCAGTTACTGTGAGCCACATTTCATTT
GCTGAGGATGGAAGTGTTCCTCCCAAAAAGCCAACTTCAGTGGCTGAGGTAGCAAAGCAG
CGTGAGCTTAGCGGTACTCTGCAAAGTGAAGCAGACAGTAAGATGAAGAAGCAGATTTCA
AATGCAAAATCAAAGGAACTCAGTGGCCATGGCCTTTTTGACCCTCAAGATGTAAGGCCT
AATGGGGCAAGGAACACAGCAAATGGCACCGGTGCCTCACACACACCTGTGAGAAATGCA
AATGTGAGCAGCTTCTCGTTTGGGGAGGCCAACACTGACAGCGTGACGAAAACTGCAAAG
AAGATAACTGGCAAGAAATTCACCGATCTCACAGGCAACAACATATTCAAAGGAGACGAG
GCCCCTGCTTCTGCGGAGAAGCATCTGAGCACCGCGAAGCTGAAAGAAATGACTGGGAGC
AACATATTCGCGGAAGGACAGGCGCCAACCCGAGAGTATCATAGCGGGAACCGCAAGCCT
CCTGGCGGCGAGAGCAGCATTGCGCTGGTTTAGCATTCTGGTGGACACCGTCGCTGTCCG
TGTTTTCCTCTTTAGGATGAACCCTAGGAGTCGTTCTATCAGCAGATTGAGCTGCCAGTT
TGCTTTCCTGTTTCGACGGTTAGGCATAAAGTTTGTTTCCTGCTGATGTGGGTAAAGACA
GGCTATGCTCTCCTAGCATAACATTTGTTGTGGTGTTGTAGTTTGGTATGGTCAGTCACT
TTGCTGTGACATACTCAAATGGAACAGCCTACATGGTGTGCGCTCTCATTTCTGTGACTG
AAGATGCCGTTGCTTTGGTGTCTCTCCTTTCATTGTGTACGCCAGATCTGTACTGTTGAC
AAATAATAAATTGGTTGGTATGTTGCCTAAAATGCAGCTGTGAATAC