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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0387100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:15420151:15424562:1 gene:Os03g0387100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-TOLERANCE 1 description:Proteasome alpha 2 subunit, Thermotolerance (Os03t0387100-01)
Sequence

ATGGGCGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGCCCGTCGGGGAAGCTGGTG
CAGATCGAGCACGCGCTGACGGCGGTCGGGTCCGGCCAGACCTCCCTCGGGATCAAAGCT
GCTAATGGAGTAGTTATTGCCACCGAGAAGAAGTTGCCTTCTATTTTAGTGGATGAAACA
TCTGTGCAAAAGATTCAGTCGTTGACTCCAAATATTGGTGTTGTCTACAGTGGCATGGGG
CCAGACTTCCGTGTTTTAGTGAGGAAAAGTCGAAAGCAAGCACAACAGTATTATCGTCTG
TACAAGGAAACTATACCTGTTACACAGCTAGTCCGAGAAACTGCTGCTGTCATGCAGGAG
TTTACACAATCTGGTGGTGTAAGACCATTTGGTGTATCTTTGTTGATTGCTGGGTATGAT
GACAATGGTCCCCAATTGTACCAGGTTGATCCATCAGGGTCATACTTCTCCTGGAAAGCA
TCAGCTATGGGGAAAAATGTGTCAAATGCAAAGACATTTCTTGAGAAAAGATACACAGAA
GATATGGAGCTTGACGATGCCATTCATACTGCTATTTTAACTCTGAAAGAAGGATATGAA
GGACAAATCTCCGCCAACAACATTGAAATTGGGATAATCCGATCTGACCGTGAATTCAAG
GTTCTGAGCCCTGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAATAA

Peptide Sequence

PEP ID

Os03t0387100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:15420151:15424562:1 gene:Os03g0387100 transcript:Os03t0387100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-TOLERANCE 1 description:Proteasome alpha 2 subunit, Thermotolerance (Os03t0387100-01)
Sequence

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET
SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE
FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE
DMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE

Transcript Sequence

Transcript ID

Os03t0387100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15420151:15424562:1 gene:Os03g0387100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-TOLERANCE 1 description:Proteasome alpha 2 subunit, Thermotolerance (Os03t0387100-01)
Sequence

AACGAACGACACGCGAGTCGGCGGCGACAACAAATCGAAAATCGAACGGGAGAAATTCTC
TCTGATTCTCTCTCGCGGGCGGCGGAAGCAATCGTAGTTAGCAGAGGCCGGCGAGCGAGC
CGCCACCGGCGATGGGCGACAGCCAGTACTCCTTCTCCCTCACCACCTTCAGCCCGTCGG
GGAAGCTGGTGCAGATCGAGCACGCGCTGACGGCGGTCGGGTCCGGCCAGACCTCCCTCG
GGATCAAAGCTGCTAATGGAGTAGTTATTGCCACCGAGAAGAAGTTGCCTTCTATTTTAG
TGGATGAAACATCTGTGCAAAAGATTCAGTCGTTGACTCCAAATATTGGTGTTGTCTACA
GTGGCATGGGGCCAGACTTCCGTGTTTTAGTGAGGAAAAGTCGAAAGCAAGCACAACAGT
ATTATCGTCTGTACAAGGAAACTATACCTGTTACACAGCTAGTCCGAGAAACTGCTGCTG
TCATGCAGGAGTTTACACAATCTGGTGGTGTAAGACCATTTGGTGTATCTTTGTTGATTG
CTGGGTATGATGACAATGGTCCCCAATTGTACCAGGTTGATCCATCAGGGTCATACTTCT
CCTGGAAAGCATCAGCTATGGGGAAAAATGTGTCAAATGCAAAGACATTTCTTGAGAAAA
GATACACAGAAGATATGGAGCTTGACGATGCCATTCATACTGCTATTTTAACTCTGAAAG
AAGGATATGAAGGACAAATCTCCGCCAACAACATTGAAATTGGGATAATCCGATCTGACC
GTGAATTCAAGGTTCTGAGCCCTGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAATAAT
TTGTCTCAACAATCTCATGTTTCAAACCAGTGGACACCTGAGCAGCTGCCTCGAAGTTAT
ATCCCCTTTCATTCATGAACTGATTGGCACCAGTGACACGAGACAAATGTTTATTCAGAT
TCTCATGAATGAAAATGTGTTTTTAGGAACGTATTTGATTTGGCACGGTGTCTTCTGTAT
CCTCTTGTGCCCATCCTAGTCTCCTCGGCCAGTGCTACAACTATTTGGCGTCTCCTTACT
TTTGTAGTCTGTTTTACTTCTTGCCAAATGAAGCACATGCCATCTTTTGCTCT