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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0377100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:14894714:14896143:1 gene:Os03g0377100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 21 description:Similar to Expansin (Expansin2). (Os03t0377100-01)
Sequence

ATGGCGCCGCCGTCGCTACCGATTCTCCTCGTCTTGCTCTCGCTGTCGTCGTCGCTGTCC
TCCTCCTCGGCGGCGGCGGCCGGCCGCTGGACCGACGCCCACGCCACCTTCTACGGCGGC
GCCGACGCCTCCGGCACCATGGGTGGCGCGTGCGGGTACGGGAACACGTACGGGCAGGGG
TACGGCACGGACACGGCGGCGCTGAGCGCGGTGATGTTCGGGGACGGGCTGAGCTGCGGC
GCCTGCTTCGAGCTGCGGTGCGGCGGCGGCGGCGGCGGCGACCGGCGGGGGTGCCTGCCG
CCGGCGGCCGGCAAGTCCATCGTGGTGACGGCCACCGACCTGTGCCCGGCCAACCACGCG
CTCCCCGGCGACCGCGGCGGCTGGTGCAACCCGCCGCTCCACCACTTCGACCTCTCCCAG
CCCGCCTTCCTCCGCATCGCCCGCTTCCAGTCCGGCATCGTCCCCGTCTCCTACCGCCGG
GTGGCGTGCCGGAGGAAGGGAGGGATGAGGTTCACCATCAACGGGCACTCCTACTTCAAC
CTGGTGCTGGTGAGCAACGTGGGCGGCGCCGGCGACGTGCACGCGGTGGCGGTGAAGGCC
GGCGGGGGAAGGAAGGCGCGGTGGCAGGCCATGGCGAGGAACTGGGGCCAGAACTGGCAG
AGCGGCGCGCTGCTCGACGGGCAGGCGCTGTCGTTCACGGTGACCACCGGCGACCGCCGA
TCCGTCGTGTCGTACAACGTCGCGCCGGCGGGATGGGCGTTCGGCCAGACCTTCACCGGA
CGCCAGTTCACCTGA

Peptide Sequence

PEP ID

Os03t0377100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:14894714:14896143:1 gene:Os03g0377100 transcript:Os03t0377100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 21 description:Similar to Expansin (Expansin2). (Os03t0377100-01)
Sequence

MAPPSLPILLVLLSLSSSLSSSSAAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQG
YGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHA
LPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFN
LVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRR
SVVSYNVAPAGWAFGQTFTGRQFT

Transcript Sequence

Transcript ID

Os03t0377100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:14894714:14896143:1 gene:Os03g0377100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 21 description:Similar to Expansin (Expansin2). (Os03t0377100-01)
Sequence

GATCGATGTGTCGAAGTGGACAAGCTGCTTAACTAATCAGCTTTCCCTTTCGCTTGCGCA
CGTACGTACGATACGACAATGGCGCCGCCGTCGCTACCGATTCTCCTCGTCTTGCTCTCG
CTGTCGTCGTCGCTGTCCTCCTCCTCGGCGGCGGCGGCCGGCCGCTGGACCGACGCCCAC
GCCACCTTCTACGGCGGCGCCGACGCCTCCGGCACCATGGGTGGCGCGTGCGGGTACGGG
AACACGTACGGGCAGGGGTACGGCACGGACACGGCGGCGCTGAGCGCGGTGATGTTCGGG
GACGGGCTGAGCTGCGGCGCCTGCTTCGAGCTGCGGTGCGGCGGCGGCGGCGGCGGCGAC
CGGCGGGGGTGCCTGCCGCCGGCGGCCGGCAAGTCCATCGTGGTGACGGCCACCGACCTG
TGCCCGGCCAACCACGCGCTCCCCGGCGACCGCGGCGGCTGGTGCAACCCGCCGCTCCAC
CACTTCGACCTCTCCCAGCCCGCCTTCCTCCGCATCGCCCGCTTCCAGTCCGGCATCGTC
CCCGTCTCCTACCGCCGGGTGGCGTGCCGGAGGAAGGGAGGGATGAGGTTCACCATCAAC
GGGCACTCCTACTTCAACCTGGTGCTGGTGAGCAACGTGGGCGGCGCCGGCGACGTGCAC
GCGGTGGCGGTGAAGGCCGGCGGGGGAAGGAAGGCGCGGTGGCAGGCCATGGCGAGGAAC
TGGGGCCAGAACTGGCAGAGCGGCGCGCTGCTCGACGGGCAGGCGCTGTCGTTCACGGTG
ACCACCGGCGACCGCCGATCCGTCGTGTCGTACAACGTCGCGCCGGCGGGATGGGCGTTC
GGCCAGACCTTCACCGGACGCCAGTTCACCTGAGAAGATCGATGAGATGACTCGTACGTA
TAGTAGCGCGCCTAGAACGATGATGTATGTTGTCCATTGATAGGTCGGATAAAAAAAACA
AGATTTCGAGG