Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0376900-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:14878797:14883547:1 gene:Os03g0376900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-02)
Sequence

ATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCC
AAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTC
TGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAG
GCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCA
TCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAA
GAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATA
GAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTT
GGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAA
TACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCA
AGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCAT
AAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTT
CCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAA
GTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACG
GTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTT
GAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTT
GCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTG
TCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTAC
ACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCT
GCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCTGGAGCTGCTGCT
CCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCT
CCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCA
GGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCG
CCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACAT
CCATATTATCGCTAA

Peptide Sequence

PEP ID

Os03t0376900-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:14878797:14883547:1 gene:Os03g0376900 transcript:Os03t0376900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-02)
Sequence

MSSSVGGGGGQQFRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQ
AFVEFTDINQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTI
EGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIP
RYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRK
VEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASV
AKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS
AGWQGNPQAGGAYAPPGAAAPNHGTTGQVPNWNPGNSGYAPAPGAYPGQMYSSPMQYGAS
GGFSAPAAPPQELHTSQQMPPPQYGNQPGPAGAPGTGQPHPYYR

Transcript Sequence

Transcript ID

Os03t0376900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:14878797:14883547:1 gene:Os03g0376900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0376900-02)
Sequence

ATGCTGCGCACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCC
TAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCC
TCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCA
GACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCT
CGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAA
CCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTA
CTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTC
AAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCT
AGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTT
CTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGC
ACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAG
AAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTT
CTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAA
CCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGA
TGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATA
TGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAAT
AGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTAC
AGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAA
GCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAG
CAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACC
AACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCTGG
AGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTC
TGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTA
TGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCA
GCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGG
GCAACCACATCCATATTATCGCTAAATTTAGATTCCTATTCACAACTGGTACTATGCCCT
TTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTC
TTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTC