Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0372500-03
CDS Infomation	cds chromosome:IRGSP-1.0:3:14656279:14664804:1 gene:Os03g0372500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protein phosphatase 52 description:Hypothetical gene. (Os03t0372500-01);Similar to TA11 protein (Fragment). (Os03t0372500-02);Similar to TA11 protein (Fragment). (Os03t0372500-03)
Sequence	ATGGTGCTGGGACTGGGTGTAGCCAACCAGCCAGCCATGGGTAACAGCACCTCCAGGGTC GTTGGCTGCTTCGCACCAGCAGACAAGGCCGCCGGTGGCGGCGTCGGTTTGGAGTTCCTG CAGCCGCTGGACGAAGGACTCGGCCATTCCTTCTGCTATGTCCGCCCAGGGGCCATCACT GACTCGCCGGCCATCACGCCATCCAACTCCGAGAGGTACACGCTCGACTCCTCCGTGCTG GATTCGGAGACCCGCAGCGGGTCATTCCGGCAGGAGGTTGTCGTTGTCGACGACCTGGCG GCGGCAGCCATGGCCGGGTTGCAGAGGCCGAGCAAGAGTTTCTCGGAGACCACCTTCCGG ACGATCTCGGGGGCCTCCGTCAGCGCCAACCCGTCCTCGGCTCGGACAGGCAATCTGTGT GTGTCCCTTGCTGCTGATGTGCAGGAGCCTGCCGCCGCATTCGAGAGCACCGCCTCTTTC GCCGCCGTTCCGTTGCAGCCGGTGCCACGGGGATCAGGGCCGCTCAATACCTTCTTGTCA GGGCCGCTTGAGAGAGGATTTGCGTCGGGGCCGCTGGACAAAGGCGCTGGGTTCATGTCT GGGCCACTGGATAAAGGAGTCTTCATGTCTGGTCCTATTGACAGTGGCAACAAAAGCAAC TTCTCGGCACCTCTTTCGTATGGTCGGAGGAAGGCTGGTCTCGGACAGCTTGTACGTAGC ATTAGCAGACCGATGAGAAGTGCGCTGTCAAGAACATTTAGTAGGAGCTCACAAGGTACT GGTTGGGTCCAAAGATTTCTGTTGCATCCTATGGCTCAACTGAGCTTGTCGAGGGATGCA AAGGGCACTTCGGAAGATTCACATAATGGGTTGGAAGCTGGGCTCCCTGAGCTTGAGTAT AGTGTAACAAGGAACCTGCAGTGGGCTCATGGCAAGGCAGGAGAGGATAGGGTTCATGTT GTCCTCTCTGAAGAGCAAGGGTGGTTGTTTATTGGAATTTATGATGGTTTTAGCGGTCCG GATGCACCGGACTTCTTAATGAGCAATCTATACAAGGCCATTGATAAAGAGCTGGAAGGA CTGCTCTGGGTTTATGAAGACAGTCCTGAAGGGAGTGCTCAAGTATCTACTCTTGGAGAG GGTGAATCCGTTGCAGTTCCTCAGGACCTGCCTGATGGAGGTGACATTCTGTTCCAAGCT GATAGTGTTGAATCAGAACAACTTGTTAATTCTGAGGAACAAGATGTATCCAATGTGAAG ATAAGTGATGGGGGTGCTTCGCAAGTTCAGATGGATTTGAACACCAGTGGTCAGAGAGAT TTAGTGTTGCAGGCTTCAAGTAATCAGAAGTTGAATGCTGGTGAAATAGTCGAGGAAAAG GTGGGGGCTGATATGGGGAATAATCTCCAGAGTACAGAGTCTTATAACTCTGGTAGAGAT ATTTCAAATACAGATGTAAACACTAGCTTTGGTTGTACATCAGATGTAAACACTAGTACT TGTTGTAATGAAGATGTCAAATCACCGAAAGAAATCAGGAGCAGACGACTTTTTGAGCTA CTTGAGATGGAATTGCTCGAAGAATATAATAGAAATGTTTCCAAATTATCACCAGAGGGA ATGAAAGGGAGGAGCATATTTAATATGCAGGCAGGAACTACAGAAGAAAGCTCTAGGGAT ATAGCCGAGCTCTCTAGGTCTTCAATGGCAGCAACTGGAGAATGTCTTGATGATTTTGAG AATGATAAACATTCAAGATCAGGTGACGGTGTGCTTGGGGTAGATCCAAAAGAGTGTAAT GAATGCTCAATTTCATCATCGTCATCAGGGCACAAACAAATTCTGAGAAGATATTTGTTT GGGTCAAAGCTGAGGAAGATGTACAAGAAGCAAAAATTGTTGCAGAAGAAGTTTTTCCCT TGGAACTATGATTGGCATAGAGACCAACCTCATGTTGATGAAAGTGTTATCAAACCTTCT GAAGTTACTAGGAGATGCAAATCAGGACCAGTAGACCACGATGCTGTATTGAGGGCAATG TCACGGGCGCTTGAAAACACTGAGGAAGCATACATGGACGTAGTGGAAAGGGAGCTTGAT AAAAATCCTGAGCTCGCGTTGATGGGTTCATGTGTGCTTGTGATGTTGATGAAAGATCAG GATGTATATGTTATGAATCTTGGAGATAGCCGAGTTGTCTTGGCACAAGATAATGAGCAA TACAATAACTCAAGCTTCTTAAAGGGTGATTTAAGACATCGTAACAGGTCAAGGGAGTCA CTTGTTCGTGTTGAACTTGATAGGATATCTGAGGAGTCACCAATGCATAATCCTAATAGC CACCTAAGCAGCAACACAAAAACTAAGGAATTGACTATTTGTAAATTAAAGATGAGAGCA GTTCAACTATCGACTGATCATAGTACAAGTGTTGAGGAGGAAGTCTCGAGGATTAGGGCA GAACATCCTGACGACCCTCAATCTGTATTTAATGACAGGGTGAAAGGACAGTTGAAGGTT ACAAGAGCGTTTGGTGCAGGTTTTCTAAAGAAGCCAAAATTTAATGACATACTACTTGAG ATGTTTCGCATCGACTATGTTGGAACATCATCATATATCAGCTGCAACCCTGCTGTCCTT CACCACCGTCTTTGCTCAAATGACCGGTTTCTTGTCCTGTCCTCAGATGGACTGTATCAA TATTTCAGCAATGATGAGGTTGTTTCACATGTTGCATGGTTTATGGAAAATGTACCAGAG GGTGATCCTGCTCAATACCTTGTAGCCGAGCTGTTATGCCGTGCAGCAAAAAAGAATGGC ATGGACTTTCATGAGTTGCTGGATATCCCTCAGGGTGATCGCCGAAAATACCATGATGAT GTTTCTGTTATGGTAATTTCCCTTGAAGGCAGAATTTGGCGATCTTCTGGTTGA

Peptide Sequence

PEP ID	Os03t0372500-03
PEP Infomation	pep chromosome:IRGSP-1.0:3:14656279:14664804:1 gene:Os03g0372500 transcript:Os03t0372500-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protein phosphatase 52 description:Hypothetical gene. (Os03t0372500-01);Similar to TA11 protein (Fragment). (Os03t0372500-02);Similar to TA11 protein (Fragment). (Os03t0372500-03)
Sequence	MVLGLGVANQPAMGNSTSRVVGCFAPADKAAGGGVGLEFLQPLDEGLGHSFCYVRPGAIT DSPAITPSNSERYTLDSSVLDSETRSGSFRQEVVVVDDLAAAAMAGLQRPSKSFSETTFR TISGASVSANPSSARTGNLCVSLAADVQEPAAAFESTASFAAVPLQPVPRGSGPLNTFLS GPLERGFASGPLDKGAGFMSGPLDKGVFMSGPIDSGNKSNFSAPLSYGRRKAGLGQLVRS ISRPMRSALSRTFSRSSQGTGWVQRFLLHPMAQLSLSRDAKGTSEDSHNGLEAGLPELEY SVTRNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSNLYKAIDKELEG LLWVYEDSPEGSAQVSTLGEGESVAVPQDLPDGGDILFQADSVESEQLVNSEEQDVSNVK ISDGGASQVQMDLNTSGQRDLVLQASSNQKLNAGEIVEEKVGADMGNNLQSTESYNSGRD ISNTDVNTSFGCTSDVNTSTCCNEDVKSPKEIRSRRLFELLEMELLEEYNRNVSKLSPEG MKGRSIFNMQAGTTEESSRDIAELSRSSMAATGECLDDFENDKHSRSGDGVLGVDPKECN ECSISSSSSGHKQILRRYLFGSKLRKMYKKQKLLQKKFFPWNYDWHRDQPHVDESVIKPS EVTRRCKSGPVDHDAVLRAMSRALENTEEAYMDVVERELDKNPELALMGSCVLVMLMKDQ DVYVMNLGDSRVVLAQDNEQYNNSSFLKGDLRHRNRSRESLVRVELDRISEESPMHNPNS HLSSNTKTKELTICKLKMRAVQLSTDHSTSVEEEVSRIRAEHPDDPQSVFNDRVKGQLKV TRAFGAGFLKKPKFNDILLEMFRIDYVGTSSYISCNPAVLHHRLCSNDRFLVLSSDGLYQ YFSNDEVVSHVAWFMENVPEGDPAQYLVAELLCRAAKKNGMDFHELLDIPQGDRRKYHDD VSVMVISLEGRIWRSSG

Transcript Sequence

Transcript ID	Os03t0372500-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:14656279:14664804:1 gene:Os03g0372500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protein phosphatase 52 description:Hypothetical gene. (Os03t0372500-01);Similar to TA11 protein (Fragment). (Os03t0372500-02);Similar to TA11 protein (Fragment). (Os03t0372500-03)
Sequence	ATTCACCAACACAACCAGCAGCCACCTCCTCCTCTTCTTCCCCAACTTTCTGCTTGATCT CCACCTCCACTGCCGCCCCGCCGCCCAATCCACCACCACCGGCGGCGGCGGAGGTCAACG CCGGCCACCCTCGTCGACGCCCCCCCACATCAGCTCAGCGACGGGCATTGGGGGTCGCTG GTGTGTTGCTGCTGCTGTCGAGGTAGGGTGGTGGAGGTGGAGGGATGGTGCTGGGACTGG GTGTAGCCAACCAGCCAGCCATGGGTAACAGCACCTCCAGGGTCGTTGGCTGCTTCGCAC CAGCAGACAAGGCCGCCGGTGGCGGCGTCGGTTTGGAGTTCCTGCAGCCGCTGGACGAAG GACTCGGCCATTCCTTCTGCTATGTCCGCCCAGGGGCCATCACTGACTCGCCGGCCATCA CGCCATCCAACTCCGAGAGGTACACGCTCGACTCCTCCGTGCTGGATTCGGAGACCCGCA GCGGGTCATTCCGGCAGGAGGTTGTCGTTGTCGACGACCTGGCGGCGGCAGCCATGGCCG GGTTGCAGAGGCCGAGCAAGAGTTTCTCGGAGACCACCTTCCGGACGATCTCGGGGGCCT CCGTCAGCGCCAACCCGTCCTCGGCTCGGACAGGCAATCTGTGTGTGTCCCTTGCTGCTG ATGTGCAGGAGCCTGCCGCCGCATTCGAGAGCACCGCCTCTTTCGCCGCCGTTCCGTTGC AGCCGGTGCCACGGGGATCAGGGCCGCTCAATACCTTCTTGTCAGGGCCGCTTGAGAGAG GATTTGCGTCGGGGCCGCTGGACAAAGGCGCTGGGTTCATGTCTGGGCCACTGGATAAAG GAGTCTTCATGTCTGGTCCTATTGACAGTGGCAACAAAAGCAACTTCTCGGCACCTCTTT CGTATGGTCGGAGGAAGGCTGGTCTCGGACAGCTTGTACGTAGCATTAGCAGACCGATGA GAAGTGCGCTGTCAAGAACATTTAGTAGGAGCTCACAAGGTACTGGTTGGGTCCAAAGAT TTCTGTTGCATCCTATGGCTCAACTGAGCTTGTCGAGGGATGCAAAGGGCACTTCGGAAG ATTCACATAATGGGTTGGAAGCTGGGCTCCCTGAGCTTGAGTATAGTGTAACAAGGAACC TGCAGTGGGCTCATGGCAAGGCAGGAGAGGATAGGGTTCATGTTGTCCTCTCTGAAGAGC AAGGGTGGTTGTTTATTGGAATTTATGATGGTTTTAGCGGTCCGGATGCACCGGACTTCT TAATGAGCAATCTATACAAGGCCATTGATAAAGAGCTGGAAGGACTGCTCTGGGTTTATG AAGACAGTCCTGAAGGGAGTGCTCAAGTATCTACTCTTGGAGAGGGTGAATCCGTTGCAG TTCCTCAGGACCTGCCTGATGGAGGTGACATTCTGTTCCAAGCTGATAGTGTTGAATCAG AACAACTTGTTAATTCTGAGGAACAAGATGTATCCAATGTGAAGATAAGTGATGGGGGTG CTTCGCAAGTTCAGATGGATTTGAACACCAGTGGTCAGAGAGATTTAGTGTTGCAGGCTT CAAGTAATCAGAAGTTGAATGCTGGTGAAATAGTCGAGGAAAAGGTGGGGGCTGATATGG GGAATAATCTCCAGAGTACAGAGTCTTATAACTCTGGTAGAGATATTTCAAATACAGATG TAAACACTAGCTTTGGTTGTACATCAGATGTAAACACTAGTACTTGTTGTAATGAAGATG TCAAATCACCGAAAGAAATCAGGAGCAGACGACTTTTTGAGCTACTTGAGATGGAATTGC TCGAAGAATATAATAGAAATGTTTCCAAATTATCACCAGAGGGAATGAAAGGGAGGAGCA TATTTAATATGCAGGCAGGAACTACAGAAGAAAGCTCTAGGGATATAGCCGAGCTCTCTA GGTCTTCAATGGCAGCAACTGGAGAATGTCTTGATGATTTTGAGAATGATAAACATTCAA GATCAGGTGACGGTGTGCTTGGGGTAGATCCAAAAGAGTGTAATGAATGCTCAATTTCAT CATCGTCATCAGGGCACAAACAAATTCTGAGAAGATATTTGTTTGGGTCAAAGCTGAGGA AGATGTACAAGAAGCAAAAATTGTTGCAGAAGAAGTTTTTCCCTTGGAACTATGATTGGC ATAGAGACCAACCTCATGTTGATGAAAGTGTTATCAAACCTTCTGAAGTTACTAGGAGAT GCAAATCAGGACCAGTAGACCACGATGCTGTATTGAGGGCAATGTCACGGGCGCTTGAAA ACACTGAGGAAGCATACATGGACGTAGTGGAAAGGGAGCTTGATAAAAATCCTGAGCTCG CGTTGATGGGTTCATGTGTGCTTGTGATGTTGATGAAAGATCAGGATGTATATGTTATGA ATCTTGGAGATAGCCGAGTTGTCTTGGCACAAGATAATGAGCAATACAATAACTCAAGCT TCTTAAAGGGTGATTTAAGACATCGTAACAGGTCAAGGGAGTCACTTGTTCGTGTTGAAC TTGATAGGATATCTGAGGAGTCACCAATGCATAATCCTAATAGCCACCTAAGCAGCAACA CAAAAACTAAGGAATTGACTATTTGTAAATTAAAGATGAGAGCAGTTCAACTATCGACTG ATCATAGTACAAGTGTTGAGGAGGAAGTCTCGAGGATTAGGGCAGAACATCCTGACGACC CTCAATCTGTATTTAATGACAGGGTGAAAGGACAGTTGAAGGTTACAAGAGCGTTTGGTG CAGGTTTTCTAAAGAAGCCAAAATTTAATGACATACTACTTGAGATGTTTCGCATCGACT ATGTTGGAACATCATCATATATCAGCTGCAACCCTGCTGTCCTTCACCACCGTCTTTGCT CAAATGACCGGTTTCTTGTCCTGTCCTCAGATGGACTGTATCAATATTTCAGCAATGATG AGGTTGTTTCACATGTTGCATGGTTTATGGAAAATGTACCAGAGGGTGATCCTGCTCAAT ACCTTGTAGCCGAGCTGTTATGCCGTGCAGCAAAAAAGAATGGCATGGACTTTCATGAGT TGCTGGATATCCCTCAGGGTGATCGCCGAAAATACCATGATGATGTTTCTGTTATGGTAA TTTCCCTTGAAGGCAGAATTTGGCGATCTTCTGGTTGAGCATCAAGATGTGACTTGGGCG TGGGGGATTGGAATTTGTGCATTACAACTGCTGCTGGAGCTGTCTGATCTACAGGTTTTT TTTCAGCATTACTCCATCTGTTTGGGGGCATATGGCTGGTGGTTGTGCACTGTACATCAG CAGCAGCAGCTGCCTTGTGCATTTTGGTAGCCATTCTCAAGCTTTCATTCATGTGCCAAT TTGACTGTTTAATCTGTAATGGTTTGTTTTTGCAAAATGTCGCATTATTCAGATGTTGCA GAAGGGAATGTACAAAAGAGACACTTCCCTATTTCTAAGGGAGCTTAAAAGCTTGATCAT GAATGAATGATCCATGTTCTATACTATTCACTTGTCTTTCTGAGC