Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0356414-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:13633732:13637491:-1 gene:Os03g0356414 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced SINA protein 1, drought induced seven in absentia (SINA) protein 1, drought induced seven in absentia protein 1 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os03t0356414-01)
Sequence	ATGGCCTCAGTTACTTATATTGATGACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACT GAGGTGCTGGATGTTACCGAACTTGCTGGTGATCCTGTTCCGCATTCACCAAAACCAAAT GTGGTAGTTTCTAGCAGTGTGCGTGAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATG TATCCTCCCATTCATCAGTGCTCTAATGGTCATACATTGTGCTCTGGATGCAAACCAAGG GTTCACAATCGCTGTCCAACTTGTAGGCATGAACTGGGTAATATTAGATGTCTTGCTCTC GAGAAGGTGGCTGCGTCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGC ATTTATCCTTACTACTGCAAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGC TGTCCATATGCTGGATCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCAC TTGAAAGATGACCACAAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTC AAGTCGAATCCTCATGAAGTTGAGAATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTT GGCCAGTACTTCTGCCTACATTTCGAAGCATTTCAGCTGGGGATGGCACCTGTGTACATC GCCTTCCTGAGGTTCATGGGTGATGACTTGGAAGCAAAGAACTACAGCTACAGCCTGGAG GTAGGAGGCACTGGCCGCAAAATGATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGC CATCGGAAGGTCCGGGATAGCTATGATGGGCTTATCATCCAACGGAACATGGCCTTGTTC TTCTCTGGTGGAGAAAGGAAGGAGCTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAA CAGTGA

Peptide Sequence

PEP ID	Os03t0356414-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:13633732:13637491:-1 gene:Os03g0356414 transcript:Os03t0356414-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced SINA protein 1, drought induced seven in absentia (SINA) protein 1, drought induced seven in absentia protein 1 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os03t0356414-01)
Sequence	MASVTYIDDSGSEVIDPPKTEVLDVTELAGDPVPHSPKPNVVVSSSVRELLECPVCLSAM YPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCVG IYPYYCKLKHESQCQYRPYSCPYAGSECTVAGDIPYLVNHLKDDHKVDMHNGCTFNHRYV KSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDLEAKNYSYSLE VGGTGRKMIWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGERKELKLRVTGRIWKE Q

Transcript Sequence

Transcript ID	Os03t0356414-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:13633732:13637491:-1 gene:Os03g0356414 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:drought-induced SINA protein 1, drought induced seven in absentia (SINA) protein 1, drought induced seven in absentia protein 1 description:Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2. (Os03t0356414-01)
Sequence	AAAAAACGCGAGAAGAGAGAGAGAGAAGCTTTTAATTCGAATTCTCTCTCTCATCACGGC TTCTTCTGCTTCTCCTTCTCCTCCCCCCTCATCCCTCCTCCGCCGGTAGCCGCCGGCCGG GAGCGAGCAGCGAGCGAGACCGGAGCCCGCCGGAGCCGGTCTCGCTCCCCCCTCCTCCCT TGTTCGCGCCACCCCCGAGGACCCCTTACAATATCTAGTGTATTTATGGCCTCAGTTACT TATATTGATGACTCCGGTTCTGAGGTAATTGATCCTCCAAAGACTGAGGTGCTGGATGTT ACCGAACTTGCTGGTGATCCTGTTCCGCATTCACCAAAACCAAATGTGGTAGTTTCTAGC AGTGTGCGTGAACTGCTTGAATGTCCAGTCTGCCTGAGCGCAATGTATCCTCCCATTCAT CAGTGCTCTAATGGTCATACATTGTGCTCTGGATGCAAACCAAGGGTTCACAATCGCTGT CCAACTTGTAGGCATGAACTGGGTAATATTAGATGTCTTGCTCTCGAGAAGGTGGCTGCG TCGCTTGAACTTCCATGCAAGTACCAGAACTTCGGGTGTGTAGGCATTTATCCTTACTAC TGCAAGCTGAAGCATGAGTCACAGTGCCAATATAGGCCTTATAGCTGTCCATATGCTGGA TCTGAATGCACAGTTGCTGGTGACATTCCATACTTGGTGAATCACTTGAAAGATGACCAC AAGGTTGACATGCATAATGGCTGCACCTTCAACCATCGCTATGTCAAGTCGAATCCTCAT GAAGTTGAGAATGCCACCTGGATGCTTACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGC CTACATTTCGAAGCATTTCAGCTGGGGATGGCACCTGTGTACATCGCCTTCCTGAGGTTC ATGGGTGATGACTTGGAAGCAAAGAACTACAGCTACAGCCTGGAGGTAGGAGGCACTGGC CGCAAAATGATCTGGCAAGGGGTTCCCCGGAGCATCAGAGACAGCCATCGGAAGGTCCGG GATAGCTATGATGGGCTTATCATCCAACGGAACATGGCCTTGTTCTTCTCTGGTGGAGAA AGGAAGGAGCTCAAATTGCGGGTCACTGGGAGAATTTGGAAGGAACAGTGAAAATAAAAT GTGAAATGATCTGTTCATCGTTCTTAACCCTTGCATGAACCTATGTATCATCACAGTGCG AGAATTATAGCCATTCATAGGCAGTGACTCTAAAATGAAGACTTGTAATGTTATTAGCTT GTTTTAGCTACCATCTTCTGTTAGATTGGTGCCTGTGGATGACTAGATGACAGTCATGTA GACCAGAGTGGCACTATTGTAGAATTCCTGGCAAACTTCTCTTTGCCTTGAACTGCTTGT TGAGTTGCCATTCTGTGGTATAGGGAAATCTAATGGCAATTCATGAGATGAATGTGTTGA ACTCTTTTTCATGTTTCCAGCATATTTCTAGCTTCTTTGTTCATTCTTTC