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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0351800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:13199226:13201310:-1 gene:Os03g0351800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0351800-01)
Sequence

ATGTCAGGAGGTAGGCAATCATACTGGTGCTACCAATGTAGACAGCGGGTGAGGCCCCGC
GGCCAGGATATGGAGTGTCCCTATTGTGATTCCGGTTTTGTGTCTGAAATGGATGATGTT
GATGCTCTCATGCGCCACTTTGTTGGGATGGATCCTGATTTCCATCGTGATCCAAGATTC
GGTATCATGGAGGCAATCTCTGCTGTGATGAGGCATGGCATGGCGGGAACGAACCGGGAA
GTTGATGTGAGAGGAAGGCCAAACATATTTTCTGACCTGGAGATGGAGTTTGGCTCAGGG
CCATGGTTGCTCTTCCGTGGCCAGCTTCCTGGTCATCTCTCAGAAGACAATGGTTTTGAT
GTATTCATCAATGGACGCCGTGGTGTTGGCATGCGCAGAGCAAACATTGCAGACTACTTT
GTTGGACCTGGACTGGATGATCTGATTGAGCAATTAACTCAGAATGATCGACGAGGGCCG
CCACCTGCCACTCAATCATCGATTGATGCTATGCCTACTGTGAAGATTACACAGAGGCAT
CTCAGTGGAGACTCACATTGCCCTGTCTGCAAGGACAAGTTTGAGCTGGGATCAGAAGCA
AGGGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATAGTTCCTTGGCTGGAACAG
CACAATTCCTGCCCTGTTTGCCGATATGAGTTGCCACCACAGAGCTCTACTGGTGCTAGC
TGCTCGCGCACAAGATCAACCAACCAAAGTCAGAGTTCAAGTAGCAATGGGAGAACCAAT
GGACGTCAAAGGAGAAGGAATCCGTTCTCGTTCCTATGGCCTTTCCGATCATCAAGCTCT
AGCTCTCGTTAG

Peptide Sequence

PEP ID

Os03t0351800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:13199226:13201310:-1 gene:Os03g0351800 transcript:Os03t0351800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0351800-01)
Sequence

MSGGRQSYWCYQCRQRVRPRGQDMECPYCDSGFVSEMDDVDALMRHFVGMDPDFHRDPRF
GIMEAISAVMRHGMAGTNREVDVRGRPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGFD
VFINGRRGVGMRRANIADYFVGPGLDDLIEQLTQNDRRGPPPATQSSIDAMPTVKITQRH
LSGDSHCPVCKDKFELGSEAREMPCKHLYHSDCIVPWLEQHNSCPVCRYELPPQSSTGAS
CSRTRSTNQSQSSSSNGRTNGRQRRRNPFSFLWPFRSSSSSSR

Transcript Sequence

Transcript ID

Os03t0351800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:13199226:13201310:-1 gene:Os03g0351800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0351800-01)
Sequence

CTCCTCTTCTTCCAATATTATTTTTTCGCCTTTTCTGTTCGTGTGTTCGTGGTGGAGTTC
ATCTCGCCTTCCCCTCTTCCGGTCCTCCCACCGCTCCTCGCCACCACAAACCGCCGCCGC
CTCCTCCTCTCCTATCTGTGCGGAGGAGGTATACCACACCTTTGGATTTTGGGGAAGCAG
TACGTTGATTGGAAGAAATGTCAGGAGGTAGGCAATCATACTGGTGCTACCAATGTAGAC
AGCGGGTGAGGCCCCGCGGCCAGGATATGGAGTGTCCCTATTGTGATTCCGGTTTTGTGT
CTGAAATGGATGATGTTGATGCTCTCATGCGCCACTTTGTTGGGATGGATCCTGATTTCC
ATCGTGATCCAAGATTCGGTATCATGGAGGCAATCTCTGCTGTGATGAGGCATGGCATGG
CGGGAACGAACCGGGAAGTTGATGTGAGAGGAAGGCCAAACATATTTTCTGACCTGGAGA
TGGAGTTTGGCTCAGGGCCATGGTTGCTCTTCCGTGGCCAGCTTCCTGGTCATCTCTCAG
AAGACAATGGTTTTGATGTATTCATCAATGGACGCCGTGGTGTTGGCATGCGCAGAGCAA
ACATTGCAGACTACTTTGTTGGACCTGGACTGGATGATCTGATTGAGCAATTAACTCAGA
ATGATCGACGAGGGCCGCCACCTGCCACTCAATCATCGATTGATGCTATGCCTACTGTGA
AGATTACACAGAGGCATCTCAGTGGAGACTCACATTGCCCTGTCTGCAAGGACAAGTTTG
AGCTGGGATCAGAAGCAAGGGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATAG
TTCCTTGGCTGGAACAGCACAATTCCTGCCCTGTTTGCCGATATGAGTTGCCACCACAGA
GCTCTACTGGTGCTAGCTGCTCGCGCACAAGATCAACCAACCAAAGTCAGAGTTCAAGTA
GCAATGGGAGAACCAATGGACGTCAAAGGAGAAGGAATCCGTTCTCGTTCCTATGGCCTT
TCCGATCATCAAGCTCTAGCTCTCGTTAGATTAGCCTGGTAATCTGGTTGGAGTCCTCAA
GACTGTTTAATCGAAGATGCTCATAAAATGGGTGTTATGCATGGCATCTTATCGTCCAAT
CTGTAATGTATGGCTTGTTATGATCACCACGGAATGCTTTTCCTTGCAAGTATATCCTTC
CACAGCTTCATATCAGATACTTCTTTTAC