Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0349000-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:13100324:13109340:-1 gene:Os03g0349000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin interacting component family protein. (Os03t0349000-01)
Sequence	ATGGCCGGCGTCGGCGGCAGCAGCAGCGGCGGCGGCGACGTGGAGATGGGCGGGTGGTCG GAGCTCCTCCACTCCTCCACTAAGCTCCTCGAGCAGGCCGCCCCCACCCCGCACTTCCCT CCCCTCCAGAGGAACCTGGACCAGCTGGAGGTGCTCTCCACCAAGCTCAAGGCCAAGACG GTGCGCGCCGAGGCGCCCGTGCAGTCGCTCTCCGCCACCAGGTTGTTGGCGCGCGAGGGG ATCAATGCGGAGCAGCTCGCCAGGGACCTCAAATCCTTCGAACTTAAGACCACATTTGAG GATGTTTTTCCATCTGAAGCAACTACTGTCGAGGAGTACCTGCAGCAGCTTCATGAAATG GCAATCGTCTCATCCATTCAAGAAGCACAAAAGGACAACTTAAGGAGTTTTAACAATTAT ATGATGCAAGTTCTCGAGGATGATTGGCAGAAGGAGAAGCGAGACTTCTTGCAGAGTCTA AGCCGACTCTCTACATTACCGAAAAGAAACACTAATCTCATGGCCAGTGGGATTTCTCGT CCTGCTCTGATGCCATCTTCAGCTTCCAGTCCCCAATCTTCGTCCGGTCTGCCATCTAAG GAAGTCATGCCCATACCTAACAAAACTATAATTGAAAACAAATCTTCAGTTTATGCTGCA GTTGTGAGAGATCTTAATGATGCTAGAGGGCGCAGCCTACCTTTTGGTCCTGCTACAGCA TTCAGGGCTGCTTATGAGTCTTTATCTGTTGGTGCTATTGGGACAAAATCAGTGACCATG CATAAAGTGTGGCATTTAATTCAGGCATTAGTTGGGGAAGGGTCAACTCATCGAAACATT TCAAGAAAAATGTCACTAGTGATTGGTGCTAGACGACACCTTGAGTGGGGTCATGAAAAG TACATACTTGAGACCATCAATAGCCATCCGGCTCTAGCTGCTCTTGGTGGATCTGTTGGC AATCTTCAGAAGATTCGCGCATTTCTTCGGGTCCGTTTGCGGGATCATGGTGTGCTAGAC TTTGATGCAACTGATCTGCGTAGACAGCCACCAGTGGACACAACATGGCAACAGATTTAT TTCTGCTTGAGAACCGGATACTATGATGAGGCAAGACAAGTTGCCCAATCATCTCGTGCT GCATTCAACTTTGCTCCCCTGCTTGTAGAATGGATTACTACTAATGGTGCTGTATCCCCA GAGACTGCTCTGACAGCTTCTGAGGAATGTGACAAAATGCTGAGAATGGGTGATCGACCT GGCCGTCCTGGTTATGATAGGAAGAAGTTGCTCCTTTATGCCATGATCTGTGGTTGTCGA CGTCAAATCGACAGATTGCTTAAAGATCTGCCAACACTTTTCAATACTATAGAGGATTTC TTGTGGTTCAAATTGTCAGCTCTGCGGGAGTACACCAGTGCATCTTCTTCTAATGTTTCA AATGAAGGCTTGGTGCCTTATACTCTGGAGGATCTGCAAAGTTACTTAAACAAATTTGAA CCATCATATTATACAAAGAATGGAAAAGACCCCTTGGTCTATCCATATGTTCTGCTGTTA AGCATCCAATTGCTTCCAGCAATTCTTTATTTGTCTAAAGAAGTTGGAGAGGAAGGATAC CATGTAGATGCTGTGCATATTTCAATTGCTTTATCTGATCATGGTGTTCTCCCTGATGGT GTTGGGTCAGGCCAGAAGATGGGTATCATGGATGCTTGTGCAGAAGCTGCCAGTATAATA CGGCAGTATGGCTCTATTTATTTGCGTAATGGTAACCTTGATTTGGCCTTGGAGTATTAT GCACAGTCTGCTGCTGCAATGGGTGGAGGAGAGGTATCATGGATTGGTCGAGGGAATGCT GATCAGCAGCGGCAGCGAAATCTAATGTTGAAGCAACTGCTGACAGAGATATTACTAAGG GATGGTGGCATTCAACTTTTGCTTGGTCCAAGTGGAATGGGGGAAGAAGGAGAATTAAAG AAGTATATGATGGATTGGAGAAGCAGGCAGCAATTCTTACTTGAAGCTGCCCATCAGTGT CATGAGGCAGGCCTCTATGACAAATCAGTGGAAATTCATAAAAGAGTTGGAGCTTTTGCC ATGGCACTTCAGACAATAAATAAGTGCCTGTCGGATGCAATATGTGCCATGGCACGCAGT ATGTTAGATGGTGAAAGTCGTGCTGCTGCTCTAATTCATTCTGGTAATGAAATTATGGAA ACTGCCAGATATTCGGAAGCCAGTGTTCAAGACAAGGACCTCATATCTGAGCAACAAACT GTACTGAGACAGCTTGAAGCTATTCTCCATATCTATAGGCTTGCTCGAGCTGGACAGACT TTAGATGCTTTGAGGGAAACCATCAAACTCCCATTTCTTCATTTGGATCCTCAGGCTCCA AATGTGACAGTTGATGTGTTCAGAAACTTGTCACCGCATGTTCAAGCTTGTGTGCCAGAT CTCTTGAAGGTTGCTCTAAATTGTATGGACAATGTTAGAGATACTGATGGGACCTTGCGT GCAGTCAAGTCAAAGATCGCAAACCTCGTGGCAAGCAACATGAGCAGGAACTGGCCACAG GATTTGTATCAGAAGGTGGCGCAGTGCATATGA

Peptide Sequence

PEP ID	Os03t0349000-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:13100324:13109340:-1 gene:Os03g0349000 transcript:Os03t0349000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin interacting component family protein. (Os03t0349000-01)
Sequence	MAGVGGSSSGGGDVEMGGWSELLHSSTKLLEQAAPTPHFPPLQRNLDQLEVLSTKLKAKT VRAEAPVQSLSATRLLAREGINAEQLARDLKSFELKTTFEDVFPSEATTVEEYLQQLHEM AIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSLSRLSTLPKRNTNLMASGISR PALMPSSASSPQSSSGLPSKEVMPIPNKTIIENKSSVYAAVVRDLNDARGRSLPFGPATA FRAAYESLSVGAIGTKSVTMHKVWHLIQALVGEGSTHRNISRKMSLVIGARRHLEWGHEK YILETINSHPALAALGGSVGNLQKIRAFLRVRLRDHGVLDFDATDLRRQPPVDTTWQQIY FCLRTGYYDEARQVAQSSRAAFNFAPLLVEWITTNGAVSPETALTASEECDKMLRMGDRP GRPGYDRKKLLLYAMICGCRRQIDRLLKDLPTLFNTIEDFLWFKLSALREYTSASSSNVS NEGLVPYTLEDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAILYLSKEVGEEGY HVDAVHISIALSDHGVLPDGVGSGQKMGIMDACAEAASIIRQYGSIYLRNGNLDLALEYY AQSAAAMGGGEVSWIGRGNADQQRQRNLMLKQLLTEILLRDGGIQLLLGPSGMGEEGELK KYMMDWRSRQQFLLEAAHQCHEAGLYDKSVEIHKRVGAFAMALQTINKCLSDAICAMARS MLDGESRAAALIHSGNEIMETARYSEASVQDKDLISEQQTVLRQLEAILHIYRLARAGQT LDALRETIKLPFLHLDPQAPNVTVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLR AVKSKIANLVASNMSRNWPQDLYQKVAQCI

Transcript Sequence

Transcript ID	Os03t0349000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:13100324:13109340:-1 gene:Os03g0349000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin interacting component family protein. (Os03t0349000-01)
Sequence	GCTCCACTCCCCCCTCCGCTCCGCCGCACCACGCCCTACGACACCAACCAAACCCTCCTC CTAGCCCCCCGGCGGCGATGGCCGGCGTCGGCGGCAGCAGCAGCGGCGGCGGCGACGTGG AGATGGGCGGGTGGTCGGAGCTCCTCCACTCCTCCACTAAGCTCCTCGAGCAGGCCGCCC CCACCCCGCACTTCCCTCCCCTCCAGAGGAACCTGGACCAGCTGGAGGTGCTCTCCACCA AGCTCAAGGCCAAGACGGTGCGCGCCGAGGCGCCCGTGCAGTCGCTCTCCGCCACCAGGT TGTTGGCGCGCGAGGGGATCAATGCGGAGCAGCTCGCCAGGGACCTCAAATCCTTCGAAC TTAAGACCACATTTGAGGATGTTTTTCCATCTGAAGCAACTACTGTCGAGGAGTACCTGC AGCAGCTTCATGAAATGGCAATCGTCTCATCCATTCAAGAAGCACAAAAGGACAACTTAA GGAGTTTTAACAATTATATGATGCAAGTTCTCGAGGATGATTGGCAGAAGGAGAAGCGAG ACTTCTTGCAGAGTCTAAGCCGACTCTCTACATTACCGAAAAGAAACACTAATCTCATGG CCAGTGGGATTTCTCGTCCTGCTCTGATGCCATCTTCAGCTTCCAGTCCCCAATCTTCGT CCGGTCTGCCATCTAAGGAAGTCATGCCCATACCTAACAAAACTATAATTGAAAACAAAT CTTCAGTTTATGCTGCAGTTGTGAGAGATCTTAATGATGCTAGAGGGCGCAGCCTACCTT TTGGTCCTGCTACAGCATTCAGGGCTGCTTATGAGTCTTTATCTGTTGGTGCTATTGGGA CAAAATCAGTGACCATGCATAAAGTGTGGCATTTAATTCAGGCATTAGTTGGGGAAGGGT CAACTCATCGAAACATTTCAAGAAAAATGTCACTAGTGATTGGTGCTAGACGACACCTTG AGTGGGGTCATGAAAAGTACATACTTGAGACCATCAATAGCCATCCGGCTCTAGCTGCTC TTGGTGGATCTGTTGGCAATCTTCAGAAGATTCGCGCATTTCTTCGGGTCCGTTTGCGGG ATCATGGTGTGCTAGACTTTGATGCAACTGATCTGCGTAGACAGCCACCAGTGGACACAA CATGGCAACAGATTTATTTCTGCTTGAGAACCGGATACTATGATGAGGCAAGACAAGTTG CCCAATCATCTCGTGCTGCATTCAACTTTGCTCCCCTGCTTGTAGAATGGATTACTACTA ATGGTGCTGTATCCCCAGAGACTGCTCTGACAGCTTCTGAGGAATGTGACAAAATGCTGA GAATGGGTGATCGACCTGGCCGTCCTGGTTATGATAGGAAGAAGTTGCTCCTTTATGCCA TGATCTGTGGTTGTCGACGTCAAATCGACAGATTGCTTAAAGATCTGCCAACACTTTTCA ATACTATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTCTGCGGGAGTACACCAGTGCAT CTTCTTCTAATGTTTCAAATGAAGGCTTGGTGCCTTATACTCTGGAGGATCTGCAAAGTT ACTTAAACAAATTTGAACCATCATATTATACAAAGAATGGAAAAGACCCCTTGGTCTATC CATATGTTCTGCTGTTAAGCATCCAATTGCTTCCAGCAATTCTTTATTTGTCTAAAGAAG TTGGAGAGGAAGGATACCATGTAGATGCTGTGCATATTTCAATTGCTTTATCTGATCATG GTGTTCTCCCTGATGGTGTTGGGTCAGGCCAGAAGATGGGTATCATGGATGCTTGTGCAG AAGCTGCCAGTATAATACGGCAGTATGGCTCTATTTATTTGCGTAATGGTAACCTTGATT TGGCCTTGGAGTATTATGCACAGTCTGCTGCTGCAATGGGTGGAGGAGAGGTATCATGGA TTGGTCGAGGGAATGCTGATCAGCAGCGGCAGCGAAATCTAATGTTGAAGCAACTGCTGA CAGAGATATTACTAAGGGATGGTGGCATTCAACTTTTGCTTGGTCCAAGTGGAATGGGGG AAGAAGGAGAATTAAAGAAGTATATGATGGATTGGAGAAGCAGGCAGCAATTCTTACTTG AAGCTGCCCATCAGTGTCATGAGGCAGGCCTCTATGACAAATCAGTGGAAATTCATAAAA GAGTTGGAGCTTTTGCCATGGCACTTCAGACAATAAATAAGTGCCTGTCGGATGCAATAT GTGCCATGGCACGCAGTATGTTAGATGGTGAAAGTCGTGCTGCTGCTCTAATTCATTCTG GTAATGAAATTATGGAAACTGCCAGATATTCGGAAGCCAGTGTTCAAGACAAGGACCTCA TATCTGAGCAACAAACTGTACTGAGACAGCTTGAAGCTATTCTCCATATCTATAGGCTTG CTCGAGCTGGACAGACTTTAGATGCTTTGAGGGAAACCATCAAACTCCCATTTCTTCATT TGGATCCTCAGGCTCCAAATGTGACAGTTGATGTGTTCAGAAACTTGTCACCGCATGTTC AAGCTTGTGTGCCAGATCTCTTGAAGGTTGCTCTAAATTGTATGGACAATGTTAGAGATA CTGATGGGACCTTGCGTGCAGTCAAGTCAAAGATCGCAAACCTCGTGGCAAGCAACATGA GCAGGAACTGGCCACAGGATTTGTATCAGAAGGTGGCGCAGTGCATATGATGGGGATCTG TCCGGCCATATACCTGACACTATCAAAAGCTTCCGAAAGCACGCGGAAATGCTTTTCTGT GTTTGTGCTGGTGATGTGCTTATGGTCCGAACCGGAATGTTTCAGACTGGTGGATGCAAA TCCTTTTGATCACTCAGCTATATCAGCCAAAAGAGAACATATATGCCATGCCCGGGGGTC ATCTGATGTGTAGTGTGTGAAATGTGAAACTTAATGGCACCAATCAGAATCTGTATTATT AATCCATGGTTGTAAAGCAGTTTCTGAATATCCAAATGCACTGTTGCTTAGTTCGAGGAG ATTATCTGCGGCTCTATTGTACTGTCATTCTGTTGGCTTATCCCACTTAATCCCGCGTCC TATCTCGGATCT