Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0346700-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:12945817:12952528:1 gene:Os03g0346700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 716 description:Similar to JmjC domain containing protein, expressed. (Os03t0346700-01);Similar to JmjC domain containing protein, expressed. (Os03t0346700-02)
Sequence	ATGGAGGCGGCGGCGGCGGCGGCCGCCGTGCCGGAGGAGCTGCGGTGCAAGCGCTCCGAC GGCAAGCAGTGGCGATGCAGCGCGCCCTCCATGCCCGACAAGACCGTCTGCGAGAAGCAC TACGTCCAGGCCAAGAAGCGCGCCGCCTCCTCCGCGCTCCGGGCCTCCCTCCGCAGGTCC TCCGCCTCCGCCTCCGCCGCGCGGGGCACGACCCCGCCTGCGCGGATGGCGGTCGCGAGG CCCATCTACGGCAGGGTCGCGGGGGAGCCGGTGTACGTGGCGGAGCCGGCGCTGCCGCCG CCGCCGCCGCCGCCACGGAGGAGGCAGCCGGTCCACGGGCTGCCCATGGGCAATGCTGCC GGCGCGCGCACCGCGGCGGAGCTGGTCGGGAGGGGCTCGGCGGGGCTGGTTGCCTGCAGC TCGGCGGCGGGGGCGGCAGCGGCCGCAACCTGCCATCAGTGCCGGAGGGTCGCTAATACC ATTTGTTGTACAAGCTGCGACAGAAGGGGGTACTGCACCAACTGCATCTCGAGATGGTAC TCTGATATCCCAATTGATGATGTTCGAAAGGTTTGTCCAGCATGTCGTGGCATTTGTAAC TGCAGAGTTTGCTTACTAGGAGATAATGTAATAAAGGCAAGGGTTCAGGAGATATCTGCT GTAGATAAGTTGGAATATCTTCATAGCATTCTGGCATCTGTCCTTCCAGTATTAAAGCAG ATTTATTCTGATCAATGTTTCGAAATTGGTGTTGATACAAAAGCTTATGGACTTAGGACA GATATAATCAGGGCGAAGGTCAATCCTGATGAGCAAATGTGCTGTGACTTCTGCAAAGTG CCAGTATTTGATTATCACCGACACTGCCCAAGGTGTTTGTATGACTTATGTCTTGACTGT TGTCGAGACATAAGGCGATCTAGGACCAGTGTTGCAAGAGGAGAATATGCTGAAGGTCGT GTGGTAGATAGAAGTAAAGATACTTCGAATAAAAGAGCAAGAATGGAACCATCTGCAGAA AGTGCAAATGATAAGTCAGTCCCACAACGAAGGGACATAAAAAATATTGACATTAGATCT TTATTCCCTACATGGAGAGTCAATAATGATGGAAGCATTACTTGTGGGCCTCATGAGGCT GGTGGTTGTGGCTCCTCGAAGTTAGTGTTAAGGCGAATATTCAAAATAAACTGGATTAGT AAGCTTGTAAAAAATTCTGAGGAAATGGTCAATGGTTGTAAAGTACATGTTCTTGAGAAT GGATGCTCATCCTGCAATGATGGCAGAACATTAGAGTTAACTGGTCATCGTAACTTTGGT GTCTCAACATGTTCAAATAATGGTGGTATTGATCGGTTCTGTGTGTTCTCTCCTGTATTA GAGGACTTGAAATCTGAAGGTATTATTCATTTTCGTAAACACTGGATAAAAGGAGAACCT GTAGTTATCAGGAATGCGTTTGAGCCTTCTCTGTCATCAAGCTGGGACCCACTAAATATT TGGCGAGGAATCCAGGAAATCATGGATGAAGAAGTGGATGACGATGTCATTGTCAAAGCT GTGGATTGCTCAAACCAAGCAGAGGTGGATATTGAGCTGAAACAGTTTATCAAAGGTTAT TCAGATGGTCACAAGGGGGAAGATGGGGAATTGATGATGCTGAAATTGAAAGAGTGGCCC CCACCCAGTGTATTGGAGGAGTTTCTGCTATGCCAAAGACCAGAATTTATTGTCAATTTT CCATTAGTTGATTTTATACATTCCAGGTGGGGGCTCCTAAATCTTTCTGCTAAATTGCCC CCAGACACCCTACAACCTGAAGTTGGCTTGAAGCTGTTAATTGCATATGGAAGACATCAA GAAGCTGGTAAAGGTGATTCAGTGACAAATCTAATGATTAACATGGCTGATGTGGTGCAT ATGCTAATGCATACAGCCAAAGGGCATGACGTATGTCCAAAGAGGCTACAACCTGAGCGA TCTGAAAAGATTGCCAATGGAATGACAATGCATGTAAATGCTCATGCACCTGTTCAAAAT TTGAATGTGGATATGGGGGAACAATCACCTGACCATGTAAGCTCAAAGTTTGATGAAAGA GCGCATGCGTCTGCCTTGCGATTACAAGAGAAGTCTTCAGATGCCAAACTTAATTGTGGT TTCGAAGGCTCTTCAACTGAGTTATCTTGCTCGTCACATTCAGAGGAACCAAAAGTTAAT GGTTCAGAAAGAAGTCAGGCTGGTTCTGTTTGGGATGTGTTCCGCAGGCAGGATATTTCA AAGCTGAATGAATATTTAACTGCTAACTGGGAAGAACTGGCAGCTAGTAGTCAGGTTAAG AATCCTATTTATGAACAATCTATATATCTCAACAAGTATCATAAAAGGATACTGAAGGAT CAATATGGAATTGAACCCTGGACATTCCAACAACATATCGGTGAGGCTGTATTTGTTCCT GCTGGCTGCCCATTCCAAGTGAAAAATCTCCAGTCTACGGTTCAATTGGCTCTTGATTTC CTGTCACCGGAAAGTTTGGGGGAGTCGGCCCGAATGGCCCAGGAGATTCGCTGCCTACCA AATGATCATGATGCAAAACTGAAGATGCTCGAGATTGGAAAAATCTCTTTATATGCAGCT AGTTCTGCTGTCAGAGAAATTCAGAGAATAACCCTCGATCCCAAGTTTAATCTAGACCTT AAATTCGAGGATCAGAATCTAACTCAGGCGGTTTCTGAGAACTTGGCTAGAGTCACCAAA CAACGGAATGTACCATGCAGCTGA

Peptide Sequence

PEP ID	Os03t0346700-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:12945817:12952528:1 gene:Os03g0346700 transcript:Os03t0346700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 716 description:Similar to JmjC domain containing protein, expressed. (Os03t0346700-01);Similar to JmjC domain containing protein, expressed. (Os03t0346700-02)
Sequence	MEAAAAAAAVPEELRCKRSDGKQWRCSAPSMPDKTVCEKHYVQAKKRAASSALRASLRRS SASASAARGTTPPARMAVARPIYGRVAGEPVYVAEPALPPPPPPPRRRQPVHGLPMGNAA GARTAAELVGRGSAGLVACSSAAGAAAAATCHQCRRVANTICCTSCDRRGYCTNCISRWY SDIPIDDVRKVCPACRGICNCRVCLLGDNVIKARVQEISAVDKLEYLHSILASVLPVLKQ IYSDQCFEIGVDTKAYGLRTDIIRAKVNPDEQMCCDFCKVPVFDYHRHCPRCLYDLCLDC CRDIRRSRTSVARGEYAEGRVVDRSKDTSNKRARMEPSAESANDKSVPQRRDIKNIDIRS LFPTWRVNNDGSITCGPHEAGGCGSSKLVLRRIFKINWISKLVKNSEEMVNGCKVHVLEN GCSSCNDGRTLELTGHRNFGVSTCSNNGGIDRFCVFSPVLEDLKSEGIIHFRKHWIKGEP VVIRNAFEPSLSSSWDPLNIWRGIQEIMDEEVDDDVIVKAVDCSNQAEVDIELKQFIKGY SDGHKGEDGELMMLKLKEWPPPSVLEEFLLCQRPEFIVNFPLVDFIHSRWGLLNLSAKLP PDTLQPEVGLKLLIAYGRHQEAGKGDSVTNLMINMADVVHMLMHTAKGHDVCPKRLQPER SEKIANGMTMHVNAHAPVQNLNVDMGEQSPDHVSSKFDERAHASALRLQEKSSDAKLNCG FEGSSTELSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKLNEYLTANWEELAASSQVK NPIYEQSIYLNKYHKRILKDQYGIEPWTFQQHIGEAVFVPAGCPFQVKNLQSTVQLALDF LSPESLGESARMAQEIRCLPNDHDAKLKMLEIGKISLYAASSAVREIQRITLDPKFNLDL KFEDQNLTQAVSENLARVTKQRNVPCS

Transcript Sequence

Transcript ID	Os03t0346700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:12945817:12952528:1 gene:Os03g0346700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 716 description:Similar to JmjC domain containing protein, expressed. (Os03t0346700-01);Similar to JmjC domain containing protein, expressed. (Os03t0346700-02)
Sequence	ACGCGGCGCCCACCCACGCTTTTACCCCTTCCTGGTTTCCTCTCCCCTCCTCCCCCTTCC CCTCCCCGCGCGATCTCCCCAAACCCTAGAAACCCCCCTCCTCCGCCGCGGCGGCGCCGG CGGCGGGGTGTGACGCCGCGGTGGGGGGACGGGGATGGAGGCGGCGGCGGCGGCGGCCGC CGTGCCGGAGGAGCTGCGGTGCAAGCGCTCCGACGGCAAGCAGTGGCGATGCAGCGCGCC CTCCATGCCCGACAAGACCGTCTGCGAGAAGCACTACGTCCAGGCCAAGAAGCGCGCCGC CTCCTCCGCGCTCCGGGCCTCCCTCCGCAGGTCCTCCGCCTCCGCCTCCGCCGCGCGGGG CACGACCCCGCCTGCGCGGATGGCGGTCGCGAGGCCCATCTACGGCAGGGTCGCGGGGGA GCCGGTGTACGTGGCGGAGCCGGCGCTGCCGCCGCCGCCGCCGCCGCCACGGAGGAGGCA GCCGGTCCACGGGCTGCCCATGGGCAATGCTGCCGGCGCGCGCACCGCGGCGGAGCTGGT CGGGAGGGGCTCGGCGGGGCTGGTTGCCTGCAGCTCGGCGGCGGGGGCGGCAGCGGCCGC AACCTGCCATCAGTGCCGGAGGGTCGCTAATACCATTTGTTGTACAAGCTGCGACAGAAG GGGGTACTGCACCAACTGCATCTCGAGATGGTACTCTGATATCCCAATTGATGATGTTCG AAAGGTTTGTCCAGCATGTCGTGGCATTTGTAACTGCAGAGTTTGCTTACTAGGAGATAA TGTAATAAAGGCAAGGGTTCAGGAGATATCTGCTGTAGATAAGTTGGAATATCTTCATAG CATTCTGGCATCTGTCCTTCCAGTATTAAAGCAGATTTATTCTGATCAATGTTTCGAAAT TGGTGTTGATACAAAAGCTTATGGACTTAGGACAGATATAATCAGGGCGAAGGTCAATCC TGATGAGCAAATGTGCTGTGACTTCTGCAAAGTGCCAGTATTTGATTATCACCGACACTG CCCAAGGTGTTTGTATGACTTATGTCTTGACTGTTGTCGAGACATAAGGCGATCTAGGAC CAGTGTTGCAAGAGGAGAATATGCTGAAGGTCGTGTGGTAGATAGAAGTAAAGATACTTC GAATAAAAGAGCAAGAATGGAACCATCTGCAGAAAGTGCAAATGATAAGTCAGTCCCACA ACGAAGGGACATAAAAAATATTGACATTAGATCTTTATTCCCTACATGGAGAGTCAATAA TGATGGAAGCATTACTTGTGGGCCTCATGAGGCTGGTGGTTGTGGCTCCTCGAAGTTAGT GTTAAGGCGAATATTCAAAATAAACTGGATTAGTAAGCTTGTAAAAAATTCTGAGGAAAT GGTCAATGGTTGTAAAGTACATGTTCTTGAGAATGGATGCTCATCCTGCAATGATGGCAG AACATTAGAGTTAACTGGTCATCGTAACTTTGGTGTCTCAACATGTTCAAATAATGGTGG TATTGATCGGTTCTGTGTGTTCTCTCCTGTATTAGAGGACTTGAAATCTGAAGGTATTAT TCATTTTCGTAAACACTGGATAAAAGGAGAACCTGTAGTTATCAGGAATGCGTTTGAGCC TTCTCTGTCATCAAGCTGGGACCCACTAAATATTTGGCGAGGAATCCAGGAAATCATGGA TGAAGAAGTGGATGACGATGTCATTGTCAAAGCTGTGGATTGCTCAAACCAAGCAGAGGT GGATATTGAGCTGAAACAGTTTATCAAAGGTTATTCAGATGGTCACAAGGGGGAAGATGG GGAATTGATGATGCTGAAATTGAAAGAGTGGCCCCCACCCAGTGTATTGGAGGAGTTTCT GCTATGCCAAAGACCAGAATTTATTGTCAATTTTCCATTAGTTGATTTTATACATTCCAG GTGGGGGCTCCTAAATCTTTCTGCTAAATTGCCCCCAGACACCCTACAACCTGAAGTTGG CTTGAAGCTGTTAATTGCATATGGAAGACATCAAGAAGCTGGTAAAGGTGATTCAGTGAC AAATCTAATGATTAACATGGCTGATGTGGTGCATATGCTAATGCATACAGCCAAAGGGCA TGACGTATGTCCAAAGAGGCTACAACCTGAGCGATCTGAAAAGATTGCCAATGGAATGAC AATGCATGTAAATGCTCATGCACCTGTTCAAAATTTGAATGTGGATATGGGGGAACAATC ACCTGACCATGTAAGCTCAAAGTTTGATGAAAGAGCGCATGCGTCTGCCTTGCGATTACA AGAGAAGTCTTCAGATGCCAAACTTAATTGTGGTTTCGAAGGCTCTTCAACTGAGTTATC TTGCTCGTCACATTCAGAGGAACCAAAAGTTAATGGTTCAGAAAGAAGTCAGGCTGGTTC TGTTTGGGATGTGTTCCGCAGGCAGGATATTTCAAAGCTGAATGAATATTTAACTGCTAA CTGGGAAGAACTGGCAGCTAGTAGTCAGGTTAAGAATCCTATTTATGAACAATCTATATA TCTCAACAAGTATCATAAAAGGATACTGAAGGATCAATATGGAATTGAACCCTGGACATT CCAACAACATATCGGTGAGGCTGTATTTGTTCCTGCTGGCTGCCCATTCCAAGTGAAAAA TCTCCAGTCTACGGTTCAATTGGCTCTTGATTTCCTGTCACCGGAAAGTTTGGGGGAGTC GGCCCGAATGGCCCAGGAGATTCGCTGCCTACCAAATGATCATGATGCAAAACTGAAGAT GCTCGAGATTGGAAAAATCTCTTTATATGCAGCTAGTTCTGCTGTCAGAGAAATTCAGAG AATAACCCTCGATCCCAAGTTTAATCTAGACCTTAAATTCGAGGATCAGAATCTAACTCA GGCGGTTTCTGAGAACTTGGCTAGAGTCACCAAACAACGGAATGTACCATGCAGCTGAGA TACTCCATTTAAATTAGATATAGCAATTGTACATGTATTACATGGTGTCATATGAAAGGA ACACAATGACACATTCTAATTGTTATCAGATAGCATAAGCCCTCACCTGTATATTGGAAT TGGACTAGGACTAACGGCTGAGCTCATGTAAACAGAATAAACGTGGAGCAATTATTTAGC ATTAGATTGTCAGAATGAGATTTACTGGGTTGCTTAGAGACTGTCACTTTGATACAACTA ATTCTTCTGCCGCTTCTGGGAGAAATTTTACATCTGTTGACTGTTATTAAGTAACTTTGC T