Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0344100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:12814668:12819290:1 gene:Os03g0344100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. (Os03t0344100-01);Similar to Alternative splicing regulator. (Os03t0344100-02)
Sequence

ATGAGCAGGCGGTGGAGCCGGACGATCTACGTGGGGAATCTCCCTGGTGACATCAGGGAG
AGGGAGGTGGAGGATCTCTTCTACAAGTATGGCCGAATTGTTGATATTGACTTGAAGATC
CCTCCGAGGCCACCAGGCTATGCTTTTGTAGAGTTTGAAGATCCTCGTGATGCTGAAGAA
GCATGTGCTGGCAGGGATGGTTATAACTTTGATGGACATCGTCTAAGGGTTGAACCTGCT
CACGGTGGGAGAGGTAATGGTGGTTCCTCCTTTGACCGCCCCAGCAACTTTGGTGGTGGA
GGACGCCGTGGTGTGTCCAGGCACTCAGAATACCGTGTTCTGGTTACTGGTTTGCCTTCT
TCTGCATCATGGCAAGATTTAAAGGACCATATGCGCAAGGCTGGTGATGTTTGTTTCTCA
GAAGTGTATCGCGAGGGCGGCGGTACTGTAGGGATTGTGGACTACACAAACTATGATGAC
ATGAAATATGCTATAAAGAAACTTGATGACAGTGAATTCAGGAATGCCTTTTCTAAAGGT
CACATAAGGGTGAAGGAATATGATGGCAAGCGCGCCCGCTCCTATTCACGTAGCCGAAGC
CCAAGTCGTAGCCGAAGCAAAAGCAGGAGTCTAAGTAAATCTCCTAGAACTCGCCGTTCA
GCATCCCGATCTCGATCTCGATCAAGGTCTGTTTCTTCCCGTTCACGGTCAGCATCAAAA
GGGCGCTCTCCATCAAGATCACCAGCAAGATCCAAATCTCCAAATGCTTCTCCTGCAAAT
GGTGAAGCATCAAGCCCCAAGAAACGGAGCCCAAGCAGGAGCCCATCTCGTTCACGGTCT
CCTGATGCGAAATCTGAATAG

Peptide Sequence

PEP ID

Os03t0344100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:12814668:12819290:1 gene:Os03g0344100 transcript:Os03t0344100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. (Os03t0344100-01);Similar to Alternative splicing regulator. (Os03t0344100-02)
Sequence

MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEE
ACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS
SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEFRNAFSKG
HIRVKEYDGKRARSYSRSRSPSRSRSKSRSLSKSPRTRRSASRSRSRSRSVSSRSRSASK
GRSPSRSPARSKSPNASPANGEASSPKKRSPSRSPSRSRSPDAKSE

Transcript Sequence

Transcript ID

Os03t0344100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12814668:12819290:1 gene:Os03g0344100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. (Os03t0344100-01);Similar to Alternative splicing regulator. (Os03t0344100-02)
Sequence

CTCTTCCCCGTGCGACCCGCCCAACCCAAACCCTAGGTCACCCAGCGCCGCGGCGCCCCC
GGTTGCTGACTTGCCGCGGGAAGGAGGATGAGCAGGCGGTGGAGCCGGACGATCTACGTG
GGGAATCTCCCTGGTGACATCAGGGAGAGGGAGGTGGAGGATCTCTTCTACAAGTATGGC
CGAATTGTTGATATTGACTTGAAGATCCCTCCGAGGCCACCAGGCTATGCTTTTGTAGAG
TTTGAAGATCCTCGTGATGCTGAAGAAGCATGTGCTGGCAGGGATGGTTATAACTTTGAT
GGACATCGTCTAAGGGTTGAACCTGCTCACGGTGGGAGAGGTAATGGTGGTTCCTCCTTT
GACCGCCCCAGCAACTTTGGTGGTGGAGGACGCCGTGGTGTGTCCAGGCACTCAGAATAC
CGTGTTCTGGTTACTGGTTTGCCTTCTTCTGCATCATGGCAAGATTTAAAGGACCATATG
CGCAAGGCTGGTGATGTTTGTTTCTCAGAAGTGTATCGCGAGGGCGGCGGTACTGTAGGG
ATTGTGGACTACACAAACTATGATGACATGAAATATGCTATAAAGAAACTTGATGACAGT
GAATTCAGGAATGCCTTTTCTAAAGGTCACATAAGGGTGAAGGAATATGATGGCAAGCGC
GCCCGCTCCTATTCACGTAGCCGAAGCCCAAGTCGTAGCCGAAGCAAAAGCAGGAGTCTA
AGTAAATCTCCTAGAACTCGCCGTTCAGCATCCCGATCTCGATCTCGATCAAGGTCTGTT
TCTTCCCGTTCACGGTCAGCATCAAAAGGGCGCTCTCCATCAAGATCACCAGCAAGATCC
AAATCTCCAAATGCTTCTCCTGCAAATGGTGAAGCATCAAGCCCCAAGAAACGGAGCCCA
AGCAGGAGCCCATCTCGTTCACGGTCTCCTGATGCGAAATCTGAATAGAAGTGATATGCT
GATGTGAGCAGTGACACGGACTTCTCATGTACGGCTATTTGCTGTCCTTGATGTCCGATT
ACATCCGAATCTTAGCTGTGGTGCAATGAAGCTCCATTAAATTTGATACTATGAATTTGT
AGTAATGAAAACATCAAACTATGCACTTCATGTGGCCTTCTGTGGCTGGTCTTGTTCCCT
TGGGTTTTTGGTAGTTCGCCGAATGCTACTATCTGGATTATTTTTACTCAAAACATATGT
CGGATGCTTATTGATTTCCATGTCAGTTATTTCTTGGC