Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0338000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12556849:12559702:-1 gene:Os03g0338000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alanine--glyoxylate aminotransferase 2. (Os03t0338000-01)
Sequence

GATAGAGGAGGAGGAACGGATTGTGGTTTTCTTGAATTGTTAGGTTGGGTTGTGGTTATG
ATGATGCAGGGGGGTAGGATTGCGAGGAGAGGGTTGTCGAGGCTCGCAGCGGCGGTGGAG
ACGGCCGCCGTCGCGCCGCCGAGAATGGCGGACTTCAACCACGTCCCGCTCCCCTACGAC
GGCCCGTCCGCCGCCGAGATCGCACGGAAGCGCGCCGAGTTCCTCAGCCCGTCCCTCTTC
CACTTTTATTCCAAACCACTGAACATCGTGGAGGGTAAGATGCAGTACCTGTTCGACGAG
CGCGGGCGGCGCTACCTGGACGCGTTCGCCGGCATCGCCACCGTGTGCTGCGGCCACTGC
CACCCGGACGTCGTCGGCGCGATCGCCGCGCAGGCCGGCCGCCTGCAGCACTCCACCGTG
CTCTACCTCAACCACGCCATCGCCGACTTCGCCGAGGCGCTCGCCTCCAAGATGCCCGGC
GACCTCAAGGTTGTGTTCTTCACCAACTCCGGCACGGAGGCGAACGAGCTCGCCATCATG
ATGGCGCGGCTGTACACCGGCTCCCACGACATCATATCGCTCCGGAACTCCTACCACGGC
AACGCCGCTGGCACCATGGGCGCCACCGCGCAGAAGAACTGGAAGTTCAGCGTCGTCCAG
AGCGGCGTGCACCACGCCGTGAACCCGGACCCGTACAGGGGCGCGTTCGGCTCCGACGCC
GAAAAGTACGCGCGCGACGTGCAGGAGATCATCGAGTTCGGCACCACCGGGCAGGTCGCC
GGCTTCATATCGGAGGCGATACAGGGCGTCGGTGGGATCGTGGAGCTGTCGCCGGGGTAC
CTGCCGCTGGCGTACGAGGCGGTCCGGAGCGCCGGCGGGCTGTGCATCGCCGACGAGGTC
CAGGCCGGCTTCGCGCGCGTCGGCAGCCACTTCTGGGGGTTCGAGACCCACGGCGTCGTC
CCCGACATAGTCACCATGGCCAAGGGCATCGGCAACGGCATCCCGCTGGGCGCGGTGGTG
ACGACGCCGGAGATCGCGCAGGTGCTGACAAGGCGGTGCTACTTCAACACGTTCGGTGGC
AACCCGCTGTGCACCGCCGGCGGGCTCGCCGTGCTCCGGGTGCTCGAGAAGGAGGGCCTC
CAGGCGAACGCCCACGCCGTCGGCTCCTACCTCAAGGACCGCCTCCGCGCTCTCCAGGAC
AAGCACGAAATTATCGGCGACGTGAGGGGGACGGGTTTCATGCTCGGCGTCGAGCTGGTG
ACGGACAGGCAGCTCAAGACGCCGGCGAAAGACGAGATTTGCCGCGCCATGGAGCACATG
AAAGAGATGGGCGTCTTGGTCGGCAAAGGCGGCTTCTACGGGAACGTCTTCAGGATCACT
CCCCCTCTGTGCTTCACCAAGGAGGATGCCGATTTCTTCGTCGCCGTGATGGACTCTGCA
CTGTCCAAGCTCTGA

Peptide Sequence

PEP ID

Os03t0338000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12556849:12559702:-1 gene:Os03g0338000 transcript:Os03t0338000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alanine--glyoxylate aminotransferase 2. (Os03t0338000-01)
Sequence

DRGGGTDCGFLELLGWVVVMMMQGGRIARRGLSRLAAAVETAAVAPPRMADFNHVPLPYD
GPSAAEIARKRAEFLSPSLFHFYSKPLNIVEGKMQYLFDERGRRYLDAFAGIATVCCGHC
HPDVVGAIAAQAGRLQHSTVLYLNHAIADFAEALASKMPGDLKVVFFTNSGTEANELAIM
MARLYTGSHDIISLRNSYHGNAAGTMGATAQKNWKFSVVQSGVHHAVNPDPYRGAFGSDA
EKYARDVQEIIEFGTTGQVAGFISEAIQGVGGIVELSPGYLPLAYEAVRSAGGLCIADEV
QAGFARVGSHFWGFETHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAQVLTRRCYFNTFGG
NPLCTAGGLAVLRVLEKEGLQANAHAVGSYLKDRLRALQDKHEIIGDVRGTGFMLGVELV
TDRQLKTPAKDEICRAMEHMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADFFVAVMDSA
LSKL

Transcript Sequence

Transcript ID

Os03t0338000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12556849:12559702:-1 gene:Os03g0338000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alanine--glyoxylate aminotransferase 2. (Os03t0338000-01)
Sequence

AATCGCAAAGGTAACCCATGAAAGGAAGCAGGTCCAGATTCATGGGAGAGCAGCGCTGTG
TGTGCTGCTGCCTGCCTAATTATGATTTATTCCCACACACCCTGTACGTAGATGATGCAA
AAATTTACGGGATTTGAGCGGGATATGATACACTCGTCGCAACGTTCGAATTCTCCGTTG
ATAGTGTCAATCACCGGCCGGCGAAATCTCTTTGCCGGTTGCATGCACCCCTCGCCTTAC
ATATAAACCCACACACCTGCGTCCCTGATCACACCCACACACCCACACACCTGAGTACCT
GACCTGTTAATTTCTCCTCTTCCTCCGGCGTCGTCGTCGAGGAGATCGTTCGATCGACTG
ATCAGCGATTAGGCGTGAGATAGAGGAGGAGGAACGGATTGTGGTTTTCTTGAATTGTTA
GGTTGGGTTGTGGTTATGATGATGCAGGGGGGTAGGATTGCGAGGAGAGGGTTGTCGAGG
CTCGCAGCGGCGGTGGAGACGGCCGCCGTCGCGCCGCCGAGAATGGCGGACTTCAACCAC
GTCCCGCTCCCCTACGACGGCCCGTCCGCCGCCGAGATCGCACGGAAGCGCGCCGAGTTC
CTCAGCCCGTCCCTCTTCCACTTTTATTCCAAACCACTGAACATCGTGGAGGGTAAGATG
CAGTACCTGTTCGACGAGCGCGGGCGGCGCTACCTGGACGCGTTCGCCGGCATCGCCACC
GTGTGCTGCGGCCACTGCCACCCGGACGTCGTCGGCGCGATCGCCGCGCAGGCCGGCCGC
CTGCAGCACTCCACCGTGCTCTACCTCAACCACGCCATCGCCGACTTCGCCGAGGCGCTC
GCCTCCAAGATGCCCGGCGACCTCAAGGTTGTGTTCTTCACCAACTCCGGCACGGAGGCG
AACGAGCTCGCCATCATGATGGCGCGGCTGTACACCGGCTCCCACGACATCATATCGCTC
CGGAACTCCTACCACGGCAACGCCGCTGGCACCATGGGCGCCACCGCGCAGAAGAACTGG
AAGTTCAGCGTCGTCCAGAGCGGCGTGCACCACGCCGTGAACCCGGACCCGTACAGGGGC
GCGTTCGGCTCCGACGCCGAAAAGTACGCGCGCGACGTGCAGGAGATCATCGAGTTCGGC
ACCACCGGGCAGGTCGCCGGCTTCATATCGGAGGCGATACAGGGCGTCGGTGGGATCGTG
GAGCTGTCGCCGGGGTACCTGCCGCTGGCGTACGAGGCGGTCCGGAGCGCCGGCGGGCTG
TGCATCGCCGACGAGGTCCAGGCCGGCTTCGCGCGCGTCGGCAGCCACTTCTGGGGGTTC
GAGACCCACGGCGTCGTCCCCGACATAGTCACCATGGCCAAGGGCATCGGCAACGGCATC
CCGCTGGGCGCGGTGGTGACGACGCCGGAGATCGCGCAGGTGCTGACAAGGCGGTGCTAC
TTCAACACGTTCGGTGGCAACCCGCTGTGCACCGCCGGCGGGCTCGCCGTGCTCCGGGTG
CTCGAGAAGGAGGGCCTCCAGGCGAACGCCCACGCCGTCGGCTCCTACCTCAAGGACCGC
CTCCGCGCTCTCCAGGACAAGCACGAAATTATCGGCGACGTGAGGGGGACGGGTTTCATG
CTCGGCGTCGAGCTGGTGACGGACAGGCAGCTCAAGACGCCGGCGAAAGACGAGATTTGC
CGCGCCATGGAGCACATGAAAGAGATGGGCGTCTTGGTCGGCAAAGGCGGCTTCTACGGG
AACGTCTTCAGGATCACTCCCCCTCTGTGCTTCACCAAGGAGGATGCCGATTTCTTCGTC
GCCGTGATGGACTCTGCACTGTCCAAGCTCTGAAACCTGCTCTGCACGGATGCTAGAAGA
GTAGAAGGCCATCAAAGATGTTTCACAATCTTCATCAGAGATGCATGGTTTCATGAACAG
TTCAGGAAAATTGTTCACTCCTTGATGCTTCGATGCATTTCTTATTTGTCAGAAACTTGT
AGAGAGAATCTTGGAAATCTCAATCAGTCTTGGTTGAGTCTTGTATATATAGATATAATA
AATATACGTGTGGTATCCTATATTTAAGTATACCGATACCAATTAATTTACGGTTC