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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0336400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12469445:12470602:-1 gene:Os03g0336400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 6 description:Similar to Alpha-expansin OsEXPA4. (Os03t0336400-01)
Sequence

ATGGCGCCACCCCTGCTCCTCCTCCTCGCTTCTCTCCTCCTCGTCGCAGCGCGGCGAGCC
CTCGGCCTCGGCCTCGGCCAGTGGCAGCCCGGCCACGCCACGTTCTACGGCGGCGGCGAC
GCCTCCGGCACGATGGGTGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGGTACGGC
ACGAGCACGGCGGCGCTGAGCACGGCGCTGTTCAACAGGGGCCTGAGCTGCGGCTCCTGC
TACGAGCTCCGGTGCGCGGGCGACCACCGCCGGTCGTGCCTCCCCGGCGGCGCCACCGTG
ACGGTGACGGCGACCAACTTCTGCCCCCCGAACTACGCGCTCCCGAGCGACGGCGGCGGC
TGGTGCAACCCACCGCGGCGGCACTTCGACCTCGCCGAGCCGGCGTTCCTCCGCATCGCG
CGGCACGCCGCCGGGATCGTCCCGGTCTCCTTCCGCCGCGTGGCGTGCGCCAGGAAGGGC
GGCGTCAGGTTCACCGTCAACGGCCACGCCTACTTCAACCTGGTGCTCGTCACCAACGTC
GGCGGCGCCGGCGACGTGCGCTCCCTCGCCGTGAAGGGGTCGGGGTCCGGGTCGCGCGTG
GGGGGGCGGTGGCAGCCGATGTCGCGCAACTGGGGGCAGAACTGGCAGAGCAACGCGTAC
CTCGACGGCAAGGCGCTCTCCTTCCGCGTCACCGCCGGCGACGGCCGCTCCCTCACCTGC
GCCGACGTGGCGCCCGCCGGCTGGCAGTTCGGCCAGACCTTCGAGGGCAGGCAGTTCTAG

Peptide Sequence

PEP ID

Os03t0336400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12469445:12470602:-1 gene:Os03g0336400 transcript:Os03t0336400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 6 description:Similar to Alpha-expansin OsEXPA4. (Os03t0336400-01)
Sequence

MAPPLLLLLASLLLVAARRALGLGLGQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYG
TSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGG
WCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNV
GGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTC
ADVAPAGWQFGQTFEGRQF

Transcript Sequence

Transcript ID

Os03t0336400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12469445:12470602:-1 gene:Os03g0336400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 6 description:Similar to Alpha-expansin OsEXPA4. (Os03t0336400-01)
Sequence

GCACCAAACTACCCCAATGGCGCCACCCCTGCTCCTCCTCCTCGCTTCTCTCCTCCTCGT
CGCAGCGCGGCGAGCCCTCGGCCTCGGCCTCGGCCAGTGGCAGCCCGGCCACGCCACGTT
CTACGGCGGCGGCGACGCCTCCGGCACGATGGGTGGCGCGTGCGGGTACGGGAACCTGTA
CAGCCAGGGGTACGGCACGAGCACGGCGGCGCTGAGCACGGCGCTGTTCAACAGGGGCCT
GAGCTGCGGCTCCTGCTACGAGCTCCGGTGCGCGGGCGACCACCGCCGGTCGTGCCTCCC
CGGCGGCGCCACCGTGACGGTGACGGCGACCAACTTCTGCCCCCCGAACTACGCGCTCCC
GAGCGACGGCGGCGGCTGGTGCAACCCACCGCGGCGGCACTTCGACCTCGCCGAGCCGGC
GTTCCTCCGCATCGCGCGGCACGCCGCCGGGATCGTCCCGGTCTCCTTCCGCCGCGTGGC
GTGCGCCAGGAAGGGCGGCGTCAGGTTCACCGTCAACGGCCACGCCTACTTCAACCTGGT
GCTCGTCACCAACGTCGGCGGCGCCGGCGACGTGCGCTCCCTCGCCGTGAAGGGGTCGGG
GTCCGGGTCGCGCGTGGGGGGGCGGTGGCAGCCGATGTCGCGCAACTGGGGGCAGAACTG
GCAGAGCAACGCGTACCTCGACGGCAAGGCGCTCTCCTTCCGCGTCACCGCCGGCGACGG
CCGCTCCCTCACCTGCGCCGACGTGGCGCCCGCCGGCTGGCAGTTCGGCCAGACCTTCGA
GGGCAGGCAGTTCTAGATTAGTTTAGCCAAGAGGATTATTATCTCTTAATTCTTACTAGT
ATCTTTTGAGTTTAATTGCACACCCAATCGGTGTTTAGTGAGGTCTAGTCGTCTAGTAGA
TGCTGAGGTTGCTGTGGCTCCTGCAAGAGAAGGCAAGGCATTTCGCGCCCGCGTGTCAGA
GGCCGGATGGTTTGCAGTTTGCTGCTCTGCTCTTAGTTCAGATTTGTACAGGGCATGTGG
CATGAGTAAATGAGTTGATTAGTT