Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0336000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12444923:12447213:1 gene:Os03g0336000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0336000-01)
Sequence

ATGGCGTCTCCCTTCCACTCCTCCTTCCCGCTCTCCCCGCCATCCTCCTGCCATGGAGGA
GGCGTCCTCCAGTTTGCCACTCGAGCCGCGACTAGTCCTTTCGCGTCCTACTGCAGAGCG
CCGGCGGCACGCGACGGCGGCGACGACCACGACCACGACGCGGGGATACTGCAGGCGCTC
GCGTTCAACGGCAACGGGAGCGTCCATGGCGTTCTTGATCCTGGTGTCGAGGAGGAGAAG
GAGGCGGGTGACGGCGGCGGCGGCGGGAGGCGGGGCACGCGGATCCGGGCGAGGGACTGC
GCGAAGCGGATCATGGGACTCCCCGTCGAGGAGCGGGTCAAGGTGCTCGACCTCCTGCAG
CGCGACGACGGGGCGCTCACCGTGTCCGACTACAACGACATCCTCTCCGCGCTCGCCATG
GCCGGCGACCACGACTCCGCGGTCGCGCTCTTCCGGGCGCTCCGGCCCAACGGCGTCACG
CCCGACGCGCAGTCCTACGCCACCGCCGTGCAGTGCCTCTGCCGGAAGGGCGCCCCCGAC
GAGGCCAAGGAGGCGCTCGACGAGATGGTGGCGCGCGGCTTCCGCCCCACCGTCGCCACC
TTCTCCGCCGTCGTCGGCTGCCTCTGCAAGCGCGGACGCGTCACCAGGGCCATGGAGGTG
TTCGACACCATGCGCGCCGTCGGCTGCGAGCCCACCATCCGCACCTACAACAGCCTCATC
GGCGGGCTCTGCTACGTCGGGCGGCTCGAGGAGGCGCTGGACCTGCTCAACAAGCTCAAG
GAGTCGCCGAAGCAGACGCCGGACATCTACACGTTCACCATTGTCCTCGACGGGTTCTGC
AAGGTCGGGCGGACGGACGAGGCCACGCCCATCTTCCACGACGCCGTCAGGAATGGCCTC
TCGCCGACGATATTCACCTACAACGCCCTGCTCAACGGCCACTGCAAGGAAGGGAATCCG
CTCAAGGCGTACAGCCTGCTCATGGAGATGTGCGGCAACGCCGCCTGCCCGCCGGACAGG
ATCAGCTTCAGCATCGTGCTGCAGGCGCTGCTGCGCGCCGGCGAGACCTCCGCGGCGTGG
CAGGCGTACAAGCGGATGGAGCGCGCCGGGTTCGAGGCCGACGGCCGCGCCCTGGACACG
CTCGCGCGGGGCCTGTGCCGTCAGTGCGCGGCGAACGTCGCGGCGCTCGCCGACGCGAGG
GAGGTGTTCGGCAAGCTGGTGGCGTCCGGGCACGAGCCGGTGTCGTACACCTACTGCCTG
ATGGCGCAGGCGCTGGCGCGCGGCGGCGAGGTGGACGCGGCCGTGTCGCTCCTGGGTGAG
ATGGCGCGCAGGGGTTACGCGCTGCGGAAGCGCGCGTACACCGACGTCGTCCGCGCGCTG
TGCGAGCGTGGCCGGGCGCGCGACGCGCTGCGGGTGCTGGCGCTGGTGATCGCCAGGGAC
TTCGTGCCCGGCCGGAACGCGTTCGACGCGCTGCTCGGCGAGCTCGCCCGGCAGGGGAGG
TGGCCCGACGCGATGGCCGTGTACGCCGCCGCCGTGAAGCGCGGCGTCCTCGTCTCCTTG
AAGCGGCATAGCAAGGAGGCCCTGCTGGTGCAGGAGCAGACGGAAACGCGAGAATCGTCG
GTGCAACCGTGCAACTGA

Peptide Sequence

PEP ID

Os03t0336000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12444923:12447213:1 gene:Os03g0336000 transcript:Os03t0336000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0336000-01)
Sequence

MASPFHSSFPLSPPSSCHGGGVLQFATRAATSPFASYCRAPAARDGGDDHDHDAGILQAL
AFNGNGSVHGVLDPGVEEEKEAGDGGGGGRRGTRIRARDCAKRIMGLPVEERVKVLDLLQ
RDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPD
EAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLI
GGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGL
SPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAW
QAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREVFGKLVASGHEPVSYTYCL
MAQALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCERGRARDALRVLALVIARD
FVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRGVLVSLKRHSKEALLVQEQTETRESS
VQPCN

Transcript Sequence

Transcript ID

Os03t0336000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12444923:12447213:1 gene:Os03g0336000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0336000-01)
Sequence

GCACTAGCACCTGCGTCGAATCGCTCGACCGCACGACGAGAGCCTCTCATCCTCTCGCCA
CCGAACCCCATCCATCGCGTCGTCTCTTCCTCCCCAGCTCAGCGCTCTCGTCGGTGCGCC
TATGGCGTCTCCCTTCCACTCCTCCTTCCCGCTCTCCCCGCCATCCTCCTGCCATGGAGG
AGGCGTCCTCCAGTTTGCCACTCGAGCCGCGACTAGTCCTTTCGCGTCCTACTGCAGAGC
GCCGGCGGCACGCGACGGCGGCGACGACCACGACCACGACGCGGGGATACTGCAGGCGCT
CGCGTTCAACGGCAACGGGAGCGTCCATGGCGTTCTTGATCCTGGTGTCGAGGAGGAGAA
GGAGGCGGGTGACGGCGGCGGCGGCGGGAGGCGGGGCACGCGGATCCGGGCGAGGGACTG
CGCGAAGCGGATCATGGGACTCCCCGTCGAGGAGCGGGTCAAGGTGCTCGACCTCCTGCA
GCGCGACGACGGGGCGCTCACCGTGTCCGACTACAACGACATCCTCTCCGCGCTCGCCAT
GGCCGGCGACCACGACTCCGCGGTCGCGCTCTTCCGGGCGCTCCGGCCCAACGGCGTCAC
GCCCGACGCGCAGTCCTACGCCACCGCCGTGCAGTGCCTCTGCCGGAAGGGCGCCCCCGA
CGAGGCCAAGGAGGCGCTCGACGAGATGGTGGCGCGCGGCTTCCGCCCCACCGTCGCCAC
CTTCTCCGCCGTCGTCGGCTGCCTCTGCAAGCGCGGACGCGTCACCAGGGCCATGGAGGT
GTTCGACACCATGCGCGCCGTCGGCTGCGAGCCCACCATCCGCACCTACAACAGCCTCAT
CGGCGGGCTCTGCTACGTCGGGCGGCTCGAGGAGGCGCTGGACCTGCTCAACAAGCTCAA
GGAGTCGCCGAAGCAGACGCCGGACATCTACACGTTCACCATTGTCCTCGACGGGTTCTG
CAAGGTCGGGCGGACGGACGAGGCCACGCCCATCTTCCACGACGCCGTCAGGAATGGCCT
CTCGCCGACGATATTCACCTACAACGCCCTGCTCAACGGCCACTGCAAGGAAGGGAATCC
GCTCAAGGCGTACAGCCTGCTCATGGAGATGTGCGGCAACGCCGCCTGCCCGCCGGACAG
GATCAGCTTCAGCATCGTGCTGCAGGCGCTGCTGCGCGCCGGCGAGACCTCCGCGGCGTG
GCAGGCGTACAAGCGGATGGAGCGCGCCGGGTTCGAGGCCGACGGCCGCGCCCTGGACAC
GCTCGCGCGGGGCCTGTGCCGTCAGTGCGCGGCGAACGTCGCGGCGCTCGCCGACGCGAG
GGAGGTGTTCGGCAAGCTGGTGGCGTCCGGGCACGAGCCGGTGTCGTACACCTACTGCCT
GATGGCGCAGGCGCTGGCGCGCGGCGGCGAGGTGGACGCGGCCGTGTCGCTCCTGGGTGA
GATGGCGCGCAGGGGTTACGCGCTGCGGAAGCGCGCGTACACCGACGTCGTCCGCGCGCT
GTGCGAGCGTGGCCGGGCGCGCGACGCGCTGCGGGTGCTGGCGCTGGTGATCGCCAGGGA
CTTCGTGCCCGGCCGGAACGCGTTCGACGCGCTGCTCGGCGAGCTCGCCCGGCAGGGGAG
GTGGCCCGACGCGATGGCCGTGTACGCCGCCGCCGTGAAGCGCGGCGTCCTCGTCTCCTT
GAAGCGGCATAGCAAGGAGGCCCTGCTGGTGCAGGAGCAGACGGAAACGCGAGAATCGTC
GGTGCAACCGTGCAACTGAGCGTTCCGCAGTGAAAAATTTTGCTGCAAAATTCACACATT
TTTTGGGGGGACTCTATTGTTGGAAGCTCCGGAATCTGCACCGATCAAAGGCGTGCCATT
GTTTGCATGCGAATACACGACCAGTTTTGGATTTTCGTTGACAATTCGGGAGGGGAGATG
GCGAAAACCAATTTCTGCATAATCGCTTCGACATGATCGGCTCAACCGGCCGGACCATCA
CGCTACATCAGCACCAGTGCACCAGCACTTTGGCCCTGGTAGCAACGAACGCCACCACCC
TTTCCGGAGGCAAACTTTGTTCGGTCATTCTCCGGTGAGGCTATAACTTGCTTCAGTTGC
TTGTTGTGACCTGTAAGGCTGTATAAGTAGAACATAATTGGGATTGGAGCGGATTCTGAT
TCTTCACGCTGATTTTTTCGCAGCTAGTACAAATTTGTAAAAAATGCGCTGATTTATCAG
AAGCCGAAATGCTCAACTCAGCAAAAGAACATCAAAGAGCTTAGGACAACTGTTTATAAT
CAGGCACGATG