Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0335100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12390064:12391618:1 gene:Os03g0335100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0335100-01)
Sequence

CGTTCGCGCGGCCGCGGCCCCAGGGAGAGCGTCGCGCTGTACAGCGACAACACCGGCGAG
GAGTACGCGGACGAGGCCGAGCTGATCCCGAGCGGCTGCACGGTCGTCGTGCGGCGCCGA
GTCGCGGGGCCACCTGCAGAGACGATCGTCGAGTTGACAACAAAGAAGCCAATGTCGCAG
GGCGGTGGTGGTTCTTCGTCGGACTCTGGAGCGACGTCGACGGGAGCTGAAGTCGACGAC
GAGGAGAAAGCTATCAGCGCCGTGATCGACGCCGCACAGCTCAAGTGGGAGGCCCCGACG
TCACAAGGAGGCCACTGTTACGGTCACCGCGGCGCACACGCGGGCAGGGCGCCGCCGGCC
GGGTACGTGTGCCACCGGTGCCGCGTCCCGGGACACTTCATCCAGCACTGCCCCACCAAC
GGCGATCCAAGATTCGACATCCCGAGGGTGGCGCCAACTCCAGCGTCCTCACCGGCGCCG
GCTGAGTCCGGGGAATCTGGCGGCGTCATCCCGGCGGAGCTCTACTGCAAGATTTGCCGG
AACGTGATGGCCAACGCGGTGCTGGCGAGCAAGTGCTGCTTCGACAGCTTCTGCGACAGG
TGCATCCGGGACCACATCGCCGCCAAGTCCAGGTGCGCGTGCGGGGCGCAGGCGCGCGCC
GGCGACCTGATCCCCAACACGACGCTCCGCACCACCATCGCCAACCTGCTCGCCACCACC
ACCGGCGCCGCAGCAAGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTCCGCCGGCAGC
AACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGCCGCTTCGCAGGCGAGCCGCAGCAAC
GTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAGAAAGGCGCGG
GAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGTCGACGGCGAT
CGCCACGGCAGCTACGGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGACCCCTTCTTC
GCCGTCGGCGTGCCATTCGGAGCCGATCCTTACATGTACTACGGCGGCGCGCCTTACGGC
TGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACACGAAGAGGACG
CGCCTGCGATGA

Peptide Sequence

PEP ID

Os03t0335100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12390064:12391618:1 gene:Os03g0335100 transcript:Os03t0335100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0335100-01)
Sequence

RSRGRGPRESVALYSDNTGEEYADEAELIPSGCTVVVRRRVAGPPAETIVELTTKKPMSQ
GGGGSSSDSGATSTGAEVDDEEKAISAVIDAAQLKWEAPTSQGGHCYGHRGAHAGRAPPA
GYVCHRCRVPGHFIQHCPTNGDPRFDIPRVAPTPASSPAPAESGESGGVIPAELYCKICR
NVMANAVLASKCCFDSFCDRCIRDHIAAKSRCACGAQARAGDLIPNTTLRTTIANLLATT
TGAAASASSGTDKTRSSAGSNAPQPAAPQSPAASQASRSNVSSKKSATISSGVLGPRKAR
EMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPGYVDPFFAVGVPFGADPYMYYGGAPYG
CGGAAYGYYGGEDRRDTKRTRLR

Transcript Sequence

Transcript ID

Os03t0335100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12390064:12391618:1 gene:Os03g0335100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0335100-01)
Sequence

GTTCGATCTCACAATCACTGCTGCTGCACCATTCGTCCATTCCTTTCCTCCTCCGTTCTC
CGACGATCGCTGCTGCACAATTCCTTTCCTCCTCCGTTCTCCGACGATCCAGCTCGAGGA
ACGATCCATGGCGGTGTTCTACAGGTACAGGAGCGGGGTGGACACCTTCTCCGTGCCCAT
GCAGGAGCCTTCCGTCTCCGTCGCCGAGCTCAAGCGCCTCATCATGGCCACCGCGCGCCA
CGGCCATTGACGTTCGCGCGGCCGCGGCCCCAGGGAGAGCGTCGCGCTGTACAGCGACAA
CACCGGCGAGGAGTACGCGGACGAGGCCGAGCTGATCCCGAGCGGCTGCACGGTCGTCGT
GCGGCGCCGAGTCGCGGGGCCACCTGCAGAGACGATCGTCGAGTTGACAACAAAGAAGCC
AATGTCGCAGGGCGGTGGTGGTTCTTCGTCGGACTCTGGAGCGACGTCGACGGGAGCTGA
AGTCGACGACGAGGAGAAAGCTATCAGCGCCGTGATCGACGCCGCACAGCTCAAGTGGGA
GGCCCCGACGTCACAAGGAGGCCACTGTTACGGTCACCGCGGCGCACACGCGGGCAGGGC
GCCGCCGGCCGGGTACGTGTGCCACCGGTGCCGCGTCCCGGGACACTTCATCCAGCACTG
CCCCACCAACGGCGATCCAAGATTCGACATCCCGAGGGTGGCGCCAACTCCAGCGTCCTC
ACCGGCGCCGGCTGAGTCCGGGGAATCTGGCGGCGTCATCCCGGCGGAGCTCTACTGCAA
GATTTGCCGGAACGTGATGGCCAACGCGGTGCTGGCGAGCAAGTGCTGCTTCGACAGCTT
CTGCGACAGGTGCATCCGGGACCACATCGCCGCCAAGTCCAGGTGCGCGTGCGGGGCGCA
GGCGCGCGCCGGCGACCTGATCCCCAACACGACGCTCCGCACCACCATCGCCAACCTGCT
CGCCACCACCACCGGCGCCGCAGCAAGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTC
CGCCGGCAGCAACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGCCGCTTCGCAGGCGAG
CCGCAGCAACGTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAG
AAAGGCGCGGGAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGT
CGACGGCGATCGCCACGGCAGCTACGGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGA
CCCCTTCTTCGCCGTCGGCGTGCCATTCGGAGCCGATCCTTACATGTACTACGGCGGCGC
GCCTTACGGCTGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACAC
GAAGAGGACGCGCCTGCGATGATCGCACGTCACCGGTCAATTGTTGCCTGCTGGCTGCGC
TCAACGCTAGCTTGGAGATATTTTCTTCTCTCCTTTTTGTGTTCTCCGATGATTCGGAAG
ACAAGTAGCGAGTCAAAACATGTATGATTCTTGTATAGTTGTATGTGTAAATGCT