Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0333400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12320931:12321796:1 gene:Os03g0333400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to photosystem II 11 kD protein. (Os03t0333400-01)
Sequence

ATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACT
GCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAG
TTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCG
TCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATC
AACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCC
AACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGG
GAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCC
CCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCC
CTGCTCCGCGGCCGGTGA

Peptide Sequence

PEP ID

Os03t0333400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12320931:12321796:1 gene:Os03g0333400 transcript:Os03t0333400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to photosystem II 11 kD protein. (Os03t0333400-01)
Sequence

MRPASSPVPAVLTAPATAATAAIAVKPTPPQRALQASRRELVVAAAAVALWPCGGAARAA
SDDEYVSETKDVIGKVRSTINMDRADPGVADAVAELRELSNSWVAKYRREKSLLGRPSFR
EMYSALNAVSGHYISFGPTAPIPNKRRARILEEMDTAEKALLRGR

Transcript Sequence

Transcript ID

Os03t0333400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12320931:12321796:1 gene:Os03g0333400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to photosystem II 11 kD protein. (Os03t0333400-01)
Sequence

AACCCGCGCGCTATCCCTCTCCCCCCTTCCCCTCTCACACCGCGAGCTCGCGTAGGACAC
GAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGC
TGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAG
GCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCG
GGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTC
GACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGA
GCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTC
CTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCC
CACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGA
GAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGG
CCACCGATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTT
TTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTC
GAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTT
TTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGG
ACATGCAACTCCCTAGAGTTTCCATT