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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0331600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:12219831:12223161:1 gene:Os03g0331600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW CHLOROPHYLL ACCUMULATION A description:Uncharacterised protein family Ycf54 domain containing protein. (Os03t0331600-01)
Sequence

ATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCCGCGCC
GCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGG
CGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAG
CCTCCCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTC
ATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGG
GAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTC
CCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAAC
TGGATCACAAACGCTTGA

Peptide Sequence

PEP ID

Os03t0331600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:12219831:12223161:1 gene:Os03g0331600 transcript:Os03t0331600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW CHLOROPHYLL ACCUMULATION A description:Uncharacterised protein family Ycf54 domain containing protein. (Os03t0331600-01)
Sequence

MVAPATLSLRPFATLAPSRAALPRVGAGFALPPAVSCQPRRRRLSLRAVAVDSDQQGSPE
PPDQEAKPKKYHFLVANAKFMLDEEEHFQEQLKEKLRLYGEREKEQDFWLVVEPKFLDRF
PNITKRLKRPAVALVSTDGNWITNA

Transcript Sequence

Transcript ID

Os03t0331600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:12219831:12223161:1 gene:Os03g0331600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LOW CHLOROPHYLL ACCUMULATION A description:Uncharacterised protein family Ycf54 domain containing protein. (Os03t0331600-01)
Sequence

AAGGCTAAAGCTCACCGTCCATCGTCGTCCTCCGACCTCAAGCCCCCTCTCCGAGCTGAC
ACGACCAGCTTCAGCACTTCAGTTCGGCTCCGTCCCCGAGTTCGGCAGCCGAGGCGAGTG
GGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCC
GCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGC
CGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCC
CCGAGCCTCCCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCA
AGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCT
ACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACA
GGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACG
GCAACTGGATCACAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTT
GACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCC
TTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGC
AATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTAT
GTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTT
CTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGG
GTATAATTTTCTTCATGATGC