Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0330300-03
CDS Infomation	cds chromosome:IRGSP-1.0:3:12151159:12156730:-1 gene:Os03g0330300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-01);Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-02);Viral attachment protein, fibre shaft repeat containing protein. (Os03t0330300-03)
Sequence	ATGGAGGGGGCGGTTGCTAGCAATGTGGAGCTTGATTCTGCAGTCTTCCAAGTATCCTCA GCCCAGAACAGATACGAGGCAATTGCTTGCAGTAAAGGGAATACAGAATTGATTGCATCT GGTCCTTTTGATCAATTAGTCCTGCACTTGGAAGATGCTAGGAAGTTCCAATCGTGTTCA ACAGCTGGCACTTTTAAGCTGTCGTTGTCTGGGAATGCAAAAGGATCTTCCTGGTTCACA AAATCCACCATAGCACGGTTCCTGAATACCATAAATTCACCAGATGCCTCAAAATCTGCA AATGGAATTTTACATGAAATCTCACAACTGGAGGAAACTAGAAAGTTTCATCAATCTCTC TATTCTAAGGAACAACGAAATCCTATGGGTGGTGCTTTATCCGGAGGTGTCTTTGGTACC ATTGGCGTAGAACAACAGGGAAATGTTGGCCCAAACTCATCTGAAGCAACAAAGAATGAA TTGCTTCGAGCTCTGGATTTGAGGTTGACTGTACTGAAAGAGGAGATCTTTGCGTTGTTG AATAGAGCAGTCGTTTCCAATATGTCAACTAGAGATGTATCTGATTTATCCTCATTTGTT CAGCACTTCGGTGCATCAGAGTTCAGCTGGTTGATGCGGTGCCTACTGTTGATCCCAGAC TGCCAACCCTCTGAGGTCTCCCAACAGCAGTCTTTCCCTGCCGAGAAAGATGACAAGGGA GAAAATGCACTTCATACTCGTAATATCAGCTCTCATACCATTATCCAGAGGCCTATTACC AACAATGTTTCCCCAGCAAAGCTTGCTCAAATTGAGCGTGAAAGCTCAACTGAAAGTGAT GATTCTTCTGAGTCCAGTGCTGAAGATGAGGCTGTCGTTGAAAGAAGCCGGCCACTCATG AGGTCTGCTTCACCTAGGAGATCTGCTTCTCCAATGCGAAGGGTTCAAATTGGTAGATCA GGATCTCGTAGGTCAACAGCGATTGCCATCAAGAGTCTCAGCTATTTCCCCCCTAGTCAA AGAATTCCTTTGGATAAAGATGATGAAAGTGGCAGTTGCAATGGTGAAACTGACCAGCCT TCAAGGAAATCTGACAATAATGTAAGAAGGATGAGTGTGCAGGATGCAATAAATCTCTTC GAAAGCAAGCAGAAGGATCAGAATCCGGATTCGCAAAATAAGAAAGCTGGCTTGTTTGCT ACAAAGTCAGTACTAAGAAGGTGGAGTGCAGGAATGGGTGATTCCTTGAACAATAATTCA GAAGAAAAAACCATAGATTCCACATCCCAAAGTAAATCCAACAATACAGGATCCGATTCA GAGAAGGATGGAGCTGAAACACAGGCTGAGCCAGGTTCAGCTTCAGCTTCTAACACTGTT GTTACGCCTTCTGTTGAAGGTTTTCACACTAATATGCAAGGTGTTGCAATGCCAGAAACA GAGACAGCGGTTTCATCCCATACTGAAATTTCTGCTGAGCAGACAAAGTCAGGGCAAGAG GAAAACAGTGATCGGGCAATGGCCTCTGCTGAGTGGAACCGCCAGAAGGAAGCTGAGCTT AATCAGATGTTAATGAAAATGATGCAAGTCATGCCTGGAAAGTTTTCGAGTGCTAATGTC ACCACTACTGGCATCACTTCCACAAATGAGAAGAAAGGTGGACTGCAAGGTCAGCATAAA GAGAAGCGAGACTCGAAAGTTCGAACCGATAAAGGTGGAAGGCGGCCAGCAAAGGAGGCA AGCACTAGGCCCTTGAAGGAAACAGTTGGGCAGAAGAAGGCAGCAATTACCCCCAAAACT GGCACTGCAGCTGAGAAACGCAATTCTCCAGTTCCACAAAGGGCACGGAGAAATTCATCA CCTCCGGTCCTACCAAAAGAATTGACCCCAAAAGCGCCTGCCAGAAAGAGCTCACCCAAA CCATCACCTGCACCTGTGACCCGCAGTTCATGGTCAGGTGGATCTTTGACTAAAGCAACT ACTGCACAGAAAACTAAAAGCTCTCCTGGGACAGTTTCAGCACCGACAGCAACTAGTCGG AGAAGGACTCCAGTAGCACCCTCATCTTCTCAACCAACTTCAAAGGTGGAAAGAAGTGCT CAACCGGTGAAGAACAAAAAGGAAACAGTTGCTGCTTCAAAGCCAGCAATTAAGGGAATT GAAGAAAAGAAGACTAAAACAGCAACAAAGACAAGCAGGCTAGCTAAAAGTACACCTATT TCAGATGAAAAATCAAGTGCAGCAACTAGGCCAAACTTGTATAACAAGGTTGCAAAGAAG AGCAGTGTTGTACCGCTAGAATCAAAACCATCAAAGAAAGCTACTGGGATTAGTCAAAGT GCTGGTACTGATGCTGTGAAGAGTAAGATGCCACAACTTGATGACTCTTCCAATGACATT GGAAATATTACCCAAGCTGAAGATAAGGAGCACTCTGCTGTGACAACCCAGCCAAAAACT ACTAAGGTATTGGAGGCTGATCTTGCTCAACCAGCACATGATGTTGATGAAAATTTAGAA ATTTCGCTCGATAATGACTTAAATATTGAAAAAACAGAAAATTCGGCCCCAAGTTTAGCT ACAACAGAAATGGACTCCAGTGAACAGGTTGAACCTCACACTGAGGTTCAACCACCTCCT GAAGAGGACATGGGCATCTCATCAGCTGCCTGGGTAGAGGTAGAGCATGAAGAAGTTACT GATGTGGGTGAAAATGTAGTGCCTGAGGATGTCACCTCACCATCAATTGAGCCCTTGCCA TCTTCAAGCCCTAGAATCCGTCACTCATTGTCACAAATGCTGCAAGCAGATAGCAATGAG CCGGAAATTATTGAGTGGGGAAATGCTGAAAACCCACCTGCAATAGTTTTTCATAAAGAT TCTCCAAAGGGATTAAAGAGGCTTCTAAAGTTTGCGCGTAAAAATAAAGGAGACAGCAAC AGTAATGGTTGGGCGAGCCCATCTGTTGTTTCTGAAGGAGAAGATGAACTTGAAGAACCA CGAGGTGGTAATGAAGGTGTAAATTCGAGCAGGAGAACATTTGATGGCCCCAAGACTAAC AGCATCTTATCAGCTCAATCAACCACCGGCAGCTTCAACTCAACGAATTCAGACAGGTTA CGGGATAGGCCTGGAGCTGCCCCATCAACTAAATCGTCAAGGTCGTTCTTCTCCCTATCA AACTTCCGGAGCAGCAGATCAAACGAGTCGAAGCTCAGATAG

Peptide Sequence

PEP ID	Os03t0330300-03
PEP Infomation	pep chromosome:IRGSP-1.0:3:12151159:12156730:-1 gene:Os03g0330300 transcript:Os03t0330300-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-01);Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-02);Viral attachment protein, fibre shaft repeat containing protein. (Os03t0330300-03)
Sequence	MEGAVASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCS TAGTFKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSL YSKEQRNPMGGALSGGVFGTIGVEQQGNVGPNSSEATKNELLRALDLRLTVLKEEIFALL NRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQPSEVSQQQSFPAEKDDKG ENALHTRNISSHTIIQRPITNNVSPAKLAQIERESSTESDDSSESSAEDEAVVERSRPLM RSASPRRSASPMRRVQIGRSGSRRSTAIAIKSLSYFPPSQRIPLDKDDESGSCNGETDQP SRKSDNNVRRMSVQDAINLFESKQKDQNPDSQNKKAGLFATKSVLRRWSAGMGDSLNNNS EEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEGFHTNMQGVAMPET ETAVSSHTEISAEQTKSGQEENSDRAMASAEWNRQKEAELNQMLMKMMQVMPGKFSSANV TTTGITSTNEKKGGLQGQHKEKRDSKVRTDKGGRRPAKEASTRPLKETVGQKKAAITPKT GTAAEKRNSPVPQRARRNSSPPVLPKELTPKAPARKSSPKPSPAPVTRSSWSGGSLTKAT TAQKTKSSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVAASKPAIKGI EEKKTKTATKTSRLAKSTPISDEKSSAATRPNLYNKVAKKSSVVPLESKPSKKATGISQS AGTDAVKSKMPQLDDSSNDIGNITQAEDKEHSAVTTQPKTTKVLEADLAQPAHDVDENLE ISLDNDLNIEKTENSAPSLATTEMDSSEQVEPHTEVQPPPEEDMGISSAAWVEVEHEEVT DVGENVVPEDVTSPSIEPLPSSSPRIRHSLSQMLQADSNEPEIIEWGNAENPPAIVFHKD SPKGLKRLLKFARKNKGDSNSNGWASPSVVSEGEDELEEPRGGNEGVNSSRRTFDGPKTN SILSAQSTTGSFNSTNSDRLRDRPGAAPSTKSSRSFFSLSNFRSSRSNESKLR

Transcript Sequence

Transcript ID	Os03t0330300-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:12151159:12156730:-1 gene:Os03g0330300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-01);Similar to cDNA clone:001-032-H02, full insert sequence (Fragment). (Os03t0330300-02);Viral attachment protein, fibre shaft repeat containing protein. (Os03t0330300-03)
Sequence	TTGAGCAATTAGTCCGTTGTCAGGGTTGTAACTTGTAAGCAACATGGAGGGGGCGGTTGC TAGCAATGTGGAGCTTGATTCTGCAGTCTTCCAAGTATCCTCAGCCCAGAACAGATACGA GGCAATTGCTTGCAGTAAAGGGAATACAGAATTGATTGCATCTGGTCCTTTTGATCAATT AGTCCTGCACTTGGAAGATGCTAGGAAGTTCCAATCGTGTTCAACAGCTGGCACTTTTAA GCTGTCGTTGTCTGGGAATGCAAAAGGATCTTCCTGGTTCACAAAATCCACCATAGCACG GTTCCTGAATACCATAAATTCACCAGATGCCTCAAAATCTGCAAATGGAATTTTACATGA AATCTCACAACTGGAGGAAACTAGAAAGTTTCATCAATCTCTCTATTCTAAGGAACAACG AAATCCTATGGGTGGTGCTTTATCCGGAGGTGTCTTTGGTACCATTGGCGTAGAACAACA GGGAAATGTTGGCCCAAACTCATCTGAAGCAACAAAGAATGAATTGCTTCGAGCTCTGGA TTTGAGGTTGACTGTACTGAAAGAGGAGATCTTTGCGTTGTTGAATAGAGCAGTCGTTTC CAATATGTCAACTAGAGATGTATCTGATTTATCCTCATTTGTTCAGCACTTCGGTGCATC AGAGTTCAGCTGGTTGATGCGGTGCCTACTGTTGATCCCAGACTGCCAACCCTCTGAGGT CTCCCAACAGCAGTCTTTCCCTGCCGAGAAAGATGACAAGGGAGAAAATGCACTTCATAC TCGTAATATCAGCTCTCATACCATTATCCAGAGGCCTATTACCAACAATGTTTCCCCAGC AAAGCTTGCTCAAATTGAGCGTGAAAGCTCAACTGAAAGTGATGATTCTTCTGAGTCCAG TGCTGAAGATGAGGCTGTCGTTGAAAGAAGCCGGCCACTCATGAGGTCTGCTTCACCTAG GAGATCTGCTTCTCCAATGCGAAGGGTTCAAATTGGTAGATCAGGATCTCGTAGGTCAAC AGCGATTGCCATCAAGAGTCTCAGCTATTTCCCCCCTAGTCAAAGAATTCCTTTGGATAA AGATGATGAAAGTGGCAGTTGCAATGGTGAAACTGACCAGCCTTCAAGGAAATCTGACAA TAATGTAAGAAGGATGAGTGTGCAGGATGCAATAAATCTCTTCGAAAGCAAGCAGAAGGA TCAGAATCCGGATTCGCAAAATAAGAAAGCTGGCTTGTTTGCTACAAAGTCAGTACTAAG AAGGTGGAGTGCAGGAATGGGTGATTCCTTGAACAATAATTCAGAAGAAAAAACCATAGA TTCCACATCCCAAAGTAAATCCAACAATACAGGATCCGATTCAGAGAAGGATGGAGCTGA AACACAGGCTGAGCCAGGTTCAGCTTCAGCTTCTAACACTGTTGTTACGCCTTCTGTTGA AGGTTTTCACACTAATATGCAAGGTGTTGCAATGCCAGAAACAGAGACAGCGGTTTCATC CCATACTGAAATTTCTGCTGAGCAGACAAAGTCAGGGCAAGAGGAAAACAGTGATCGGGC AATGGCCTCTGCTGAGTGGAACCGCCAGAAGGAAGCTGAGCTTAATCAGATGTTAATGAA AATGATGCAAGTCATGCCTGGAAAGTTTTCGAGTGCTAATGTCACCACTACTGGCATCAC TTCCACAAATGAGAAGAAAGGTGGACTGCAAGGTCAGCATAAAGAGAAGCGAGACTCGAA AGTTCGAACCGATAAAGGTGGAAGGCGGCCAGCAAAGGAGGCAAGCACTAGGCCCTTGAA GGAAACAGTTGGGCAGAAGAAGGCAGCAATTACCCCCAAAACTGGCACTGCAGCTGAGAA ACGCAATTCTCCAGTTCCACAAAGGGCACGGAGAAATTCATCACCTCCGGTCCTACCAAA AGAATTGACCCCAAAAGCGCCTGCCAGAAAGAGCTCACCCAAACCATCACCTGCACCTGT GACCCGCAGTTCATGGTCAGGTGGATCTTTGACTAAAGCAACTACTGCACAGAAAACTAA AAGCTCTCCTGGGACAGTTTCAGCACCGACAGCAACTAGTCGGAGAAGGACTCCAGTAGC ACCCTCATCTTCTCAACCAACTTCAAAGGTGGAAAGAAGTGCTCAACCGGTGAAGAACAA AAAGGAAACAGTTGCTGCTTCAAAGCCAGCAATTAAGGGAATTGAAGAAAAGAAGACTAA AACAGCAACAAAGACAAGCAGGCTAGCTAAAAGTACACCTATTTCAGATGAAAAATCAAG TGCAGCAACTAGGCCAAACTTGTATAACAAGGTTGCAAAGAAGAGCAGTGTTGTACCGCT AGAATCAAAACCATCAAAGAAAGCTACTGGGATTAGTCAAAGTGCTGGTACTGATGCTGT GAAGAGTAAGATGCCACAACTTGATGACTCTTCCAATGACATTGGAAATATTACCCAAGC TGAAGATAAGGAGCACTCTGCTGTGACAACCCAGCCAAAAACTACTAAGGTATTGGAGGC TGATCTTGCTCAACCAGCACATGATGTTGATGAAAATTTAGAAATTTCGCTCGATAATGA CTTAAATATTGAAAAAACAGAAAATTCGGCCCCAAGTTTAGCTACAACAGAAATGGACTC CAGTGAACAGGTTGAACCTCACACTGAGGTTCAACCACCTCCTGAAGAGGACATGGGCAT CTCATCAGCTGCCTGGGTAGAGGTAGAGCATGAAGAAGTTACTGATGTGGGTGAAAATGT AGTGCCTGAGGATGTCACCTCACCATCAATTGAGCCCTTGCCATCTTCAAGCCCTAGAAT CCGTCACTCATTGTCACAAATGCTGCAAGCAGATAGCAATGAGCCGGAAATTATTGAGTG GGGAAATGCTGAAAACCCACCTGCAATAGTTTTTCATAAAGATTCTCCAAAGGGATTAAA GAGGCTTCTAAAGTTTGCGCGTAAAAATAAAGGAGACAGCAACAGTAATGGTTGGGCGAG CCCATCTGTTGTTTCTGAAGGAGAAGATGAACTTGAAGAACCACGAGGTGGTAATGAAGG TGTAAATTCGAGCAGGAGAACATTTGATGGCCCCAAGACTAACAGCATCTTATCAGCTCA ATCAACCACCGGCAGCTTCAACTCAACGAATTCAGACAGGTTACGGGATAGGCCTGGAGC TGCCCCATCAACTAAATCGTCAAGGTCGTTCTTCTCCCTATCAAACTTCCGGAGCAGCAG ATCAAACGAGTCGAAGCTCAGATAGCATGCCATGTTCTCCAGGAGATACATGGATAATTG GATAGTCGATCCCTTCCAGTTTGGAGGTCAACTGATGTAAAAAAAAAGAGATGGTTTGAG ATTGATTGATTGTTCGGACGGAGCCAGCTTGTTGTGTTTGGTTCTGGGTTTTCTGCAATT TGATATAGTCTCTGCGTCTAATGTCATACTCAACCTCTCACCTTTCTTGTACATCTTTTC ACTTTTTAACAGTTGCTGGAACTGCAAGCTTATTTGGATCCGGTCGATGTTAGGGAAACT GGTGCTAATGTAAAGTGCATAGCGTGAGCCTGAGGTGCTCACAGCCGATTGCGATGCCCG AACTTGATCTG