Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0327100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:11937445:11939473:-1 gene:Os03g0327100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP SHAPED COTYLEDON 1 description:Similar to CUC1. (Os03t0327100-01)
Sequence

ATGTCTGAGGTGTCCGTTATGGCCGAGGTGGAGGAGACGGCGGCGGCGGCGCCGCTGGAC
CTGCCGCCGGGGTTCAGGTTCCACCCCACCGACGAGGAGATCGTCTCGCACTACCTCACC
CCCAAGGCCCTCAACCACCGCTTCTCCTCCGGCGTCATCGGCGACGTCGACCTCAACAAG
TGCGAGCCATGGCACCTCCCAGCCATGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTC
TGCCACAAGGACCGCAAGTACCCGACCGGGACGAGGACGAACCGGGCGACGGAGAGCGGC
TACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCCGCGGGAGGGGCATCCTCGTCGGC
ATGAAGAAGACGCTCGTCTTCTACCTCGGCCGCGCGCCCCGTGGCGAGAAGACCGGCTGG
GTGATGCACGAGTTCCGCCTCGAGGGCAAGCTCCCCAGCCAGCTCCCGCGCTCCGCCAAG
GACCAGTGGGCGGTGTGCAAGGTGTTCAACAAGGAGTTGGCGCTGGCGGCGAAGAACGGG
CCAATGGCGGTGACCGAAGCGACCGCCGACGACGCGGGGATCGAGCGGGTCGGCTCGTTC
AGCTTCCTCAGCGACTTCATCGACCCCGCCGAGCTGCCGCCGCTGATGGACCCTTCCTTC
GTCGCCGACATCGACGGGGTGGACGACGCCAAGGTGTCCGCGTCGACCTCCGGGCAGGCC
GCGATCGCCGCCGGCTTCCATGTCGCGTCGCAGGTCATGAGCTACCAGCAGGTCAAGATG
GAAGAGCCGTTGCCGCTGCCGTACCTGCACCAGCAGCCGCCGCGGATGCTGCACTCGGGT
CAGTACTTCTCGCTCCCGGCGGTGCACCCCGGCGACCTGACGCCGTCGGCGATCCGGAGG
TACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCGGCGCTCAGCGCCTCGCGCGACACC
GGGCTCAGCACCGACCCCAACGCCGCCGGCTGCGCGGAGATCTCGTCGGCGCCGACGTCC
CAGCCGTTCCCGGAGTTCGACGACGGGATTCTGGGCCTCGACGACTTCTGGAACTAA

Peptide Sequence

PEP ID

Os03t0327100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:11937445:11939473:-1 gene:Os03g0327100 transcript:Os03t0327100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP SHAPED COTYLEDON 1 description:Similar to CUC1. (Os03t0327100-01)
Sequence

MSEVSVMAEVEETAAAAPLDLPPGFRFHPTDEEIVSHYLTPKALNHRFSSGVIGDVDLNK
CEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFRGRGILVG
MKKTLVFYLGRAPRGEKTGWVMHEFRLEGKLPSQLPRSAKDQWAVCKVFNKELALAAKNG
PMAVTEATADDAGIERVGSFSFLSDFIDPAELPPLMDPSFVADIDGVDDAKVSASTSGQA
AIAAGFHVASQVMSYQQVKMEEPLPLPYLHQQPPRMLHSGQYFSLPAVHPGDLTPSAIRR
YCKAEQVSGQTSALSASRDTGLSTDPNAAGCAEISSAPTSQPFPEFDDGILGLDDFWN

Transcript Sequence

Transcript ID

Os03t0327100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:11937445:11939473:-1 gene:Os03g0327100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP SHAPED COTYLEDON 1 description:Similar to CUC1. (Os03t0327100-01)
Sequence

AACCCCAAGTCCATTCTCTCGTTCCCAAACCCTGCATCCTTCTCTTTCACACAAGCCTCT
CTCTCGCCGGCTTCGGCGTCCGTCTCCTCCTCCTCCTCTTCGTCTAGCCTTGTGGCGGCG
TGCGGTGCGGTGCGGTGAGGAAAGGAGGGAGCTTTGAAGGTCGGGGGAGGGCGGAGGAGA
TGTCTGAGGTGTCCGTTATGGCCGAGGTGGAGGAGACGGCGGCGGCGGCGCCGCTGGACC
TGCCGCCGGGGTTCAGGTTCCACCCCACCGACGAGGAGATCGTCTCGCACTACCTCACCC
CCAAGGCCCTCAACCACCGCTTCTCCTCCGGCGTCATCGGCGACGTCGACCTCAACAAGT
GCGAGCCATGGCACCTCCCAGCCATGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCT
GCCACAAGGACCGCAAGTACCCGACCGGGACGAGGACGAACCGGGCGACGGAGAGCGGCT
ACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCCGCGGGAGGGGCATCCTCGTCGGCA
TGAAGAAGACGCTCGTCTTCTACCTCGGCCGCGCGCCCCGTGGCGAGAAGACCGGCTGGG
TGATGCACGAGTTCCGCCTCGAGGGCAAGCTCCCCAGCCAGCTCCCGCGCTCCGCCAAGG
ACCAGTGGGCGGTGTGCAAGGTGTTCAACAAGGAGTTGGCGCTGGCGGCGAAGAACGGGC
CAATGGCGGTGACCGAAGCGACCGCCGACGACGCGGGGATCGAGCGGGTCGGCTCGTTCA
GCTTCCTCAGCGACTTCATCGACCCCGCCGAGCTGCCGCCGCTGATGGACCCTTCCTTCG
TCGCCGACATCGACGGGGTGGACGACGCCAAGGTGTCCGCGTCGACCTCCGGGCAGGCCG
CGATCGCCGCCGGCTTCCATGTCGCGTCGCAGGTCATGAGCTACCAGCAGGTCAAGATGG
AAGAGCCGTTGCCGCTGCCGTACCTGCACCAGCAGCCGCCGCGGATGCTGCACTCGGGTC
AGTACTTCTCGCTCCCGGCGGTGCACCCCGGCGACCTGACGCCGTCGGCGATCCGGAGGT
ACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCGGCGCTCAGCGCCTCGCGCGACACCG
GGCTCAGCACCGACCCCAACGCCGCCGGCTGCGCGGAGATCTCGTCGGCGCCGACGTCCC
AGCCGTTCCCGGAGTTCGACGACGGGATTCTGGGCCTCGACGACTTCTGGAACTAATCCA
CGCCTGAATGATCCGGAGCTAGCTCCCTACCGACCTTGCGCTACAGGATTTTGCTTCAGG
CTGGTTGATTAATTACTTGATTTGATTAATTAACTTGGTGTTTCATGCTTGGGTTAATTA
GTGGCAGTTTGTTGATGCATCCTTCTCTTCCTCCTTCCGATCGAAGGCTTCTTCTCGGGA
TGGGTTCGGATGATCAGATTATTTATCATCCATCCAGACCTCCAGGGATTAGCTAGGACT
CCTTGTTAATTAATCCTAGCTAGCTAGGTTTCTTCATGTCTTGATCTGATGTAAATACAA
TTACTACTACTAAGTACGGGGTATCCTGATTGTGTCTAGTAGCATGATGATTGATTATAC
TACAATCAATGGGGTGTAGATTAGGGGTGGATTGATCATTTACGAATTGATTAATTTGGC
ATTTGATGAGCCAGCTAGCTGCTAGCTTTATAAAGCTTTATACTATGTACATGTACCATT
AATTGCTTGAGCTAGACATCTCATCATATGTGAATTGATGCTTCGGTTTAGCCTT