Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0324900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:11816467:11818149:1 gene:Os03g0324900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0324900-01)
Sequence

ATGGAGGAAGAACCGAGTGCAACGTGTAGGTACTTTTGCCACATGTGCTCGCTGATCGTG
AGGCCGGAGATGGGCATCGAGGAGGTGAAGTGCCCCCACTGCCACTCCGGCTTCGTGGAA
GAGATGGTCGGCGGCGACGACGACGATGGACGGCGAAGCGGCAACGCCGCCGCCGGAGGC
CGCGGCGCTGCCAGTGAGGAGAACGCCGACGACGAGGCGACGCCCGCTCCGCCTCCTTGG
GCGCCTATGCTCATAGACCTCCTCGGCGTCTCGTCCCGACGCCACGGCCTCGATGATGGC
AGCAGCGACCTCGCCGCCTTCGCGCGGAGGCAGTACCGCAACATCGCCTTCCTGCAGCTG
CTCAGCGCGCTCCAGGACGACGACGAAGCCGGCGGCGACACGCCCGGCGACTCGGGGCGC
GAGCGGCTCGTTCTGGTTACCCCCGCGGACGGCAATGGCGCCGCCGCGACGTCCGGCTTC
ACGCTCGGCGACCTGTTCCTCGGCCCCGGGCTGGACCTGCTGCTGGACTACCTGGCCGAC
ACCGACCCGAACCGTCAGGGCACGCCGCCGGCCAGGAAGGAGGCCGTGGCCGCGCTGCCG
ACGGTCCGGGTACACGACGCGGCCGGCGCGACGTGCCCGGTGTGCCTGGACGAGTTCGAG
GCCGGCGGCGAGGCGAGGGAGATGCCGTGCAAGCACAGGTTCCACGACGGCTGCATCCTG
CCGTGGCTGGAGGCGCACAGCTCCTGCCCCGTGTGCAGGTACCAGCTGCCCACGGACGAC
GAGCCCACCGCCGGCAACGTCGTCGTTGCAGCCGAGGGCGGCGACGAGCTCATTGGCAAT
GCACGCGGCGGCGGCGGCGATGGTGATGGCGACGGAGGAAGCAGTGGCAGGAGGCGCTGG
CTCTCGTGGCCTTTTGGCGGGTTATTCTCGCACAGATCGAGCAGGAGGTCCTCCTCGTCG
TGA

Peptide Sequence

PEP ID

Os03t0324900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:11816467:11818149:1 gene:Os03g0324900 transcript:Os03t0324900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0324900-01)
Sequence

MEEEPSATCRYFCHMCSLIVRPEMGIEEVKCPHCHSGFVEEMVGGDDDDGRRSGNAAAGG
RGAASEENADDEATPAPPPWAPMLIDLLGVSSRRHGLDDGSSDLAAFARRQYRNIAFLQL
LSALQDDDEAGGDTPGDSGRERLVLVTPADGNGAAATSGFTLGDLFLGPGLDLLLDYLAD
TDPNRQGTPPARKEAVAALPTVRVHDAAGATCPVCLDEFEAGGEAREMPCKHRFHDGCIL
PWLEAHSSCPVCRYQLPTDDEPTAGNVVVAAEGGDELIGNARGGGGDGDGDGGSSGRRRW
LSWPFGGLFSHRSSRRSSSS

Transcript Sequence

Transcript ID

Os03t0324900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:11816467:11818149:1 gene:Os03g0324900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0324900-01)
Sequence

ACTAGTTGCGTGCGTCGTCTCCTCTCCTTTCGCTGACCTCTTCCTCTGGACTATGGCCGT
GTCCAGAAAAACTAGTTTCGTTGCTGTTCTAGATTCTTCTTCCTGCTTGCCTCTTCTTGA
TATTTGCCCTGGTCTAGCTGTCTTGGCCTTATAGCAGACAGAGCTGTATTCTCTGGTGAT
TGAACAGAGGATTGGAGGTTGTTCTTGGTTCTTGGAGGAGAATCATCTCCCTTGGCAGCT
CTCTACAAGCAGGAGGAAGAAGACGACACGGCAGTACAGAGGATCAATGGAGGAAGAACC
GAGTGCAACGTGTAGGTACTTTTGCCACATGTGCTCGCTGATCGTGAGGCCGGAGATGGG
CATCGAGGAGGTGAAGTGCCCCCACTGCCACTCCGGCTTCGTGGAAGAGATGGTCGGCGG
CGACGACGACGATGGACGGCGAAGCGGCAACGCCGCCGCCGGAGGCCGCGGCGCTGCCAG
TGAGGAGAACGCCGACGACGAGGCGACGCCCGCTCCGCCTCCTTGGGCGCCTATGCTCAT
AGACCTCCTCGGCGTCTCGTCCCGACGCCACGGCCTCGATGATGGCAGCAGCGACCTCGC
CGCCTTCGCGCGGAGGCAGTACCGCAACATCGCCTTCCTGCAGCTGCTCAGCGCGCTCCA
GGACGACGACGAAGCCGGCGGCGACACGCCCGGCGACTCGGGGCGCGAGCGGCTCGTTCT
GGTTACCCCCGCGGACGGCAATGGCGCCGCCGCGACGTCCGGCTTCACGCTCGGCGACCT
GTTCCTCGGCCCCGGGCTGGACCTGCTGCTGGACTACCTGGCCGACACCGACCCGAACCG
TCAGGGCACGCCGCCGGCCAGGAAGGAGGCCGTGGCCGCGCTGCCGACGGTCCGGGTACA
CGACGCGGCCGGCGCGACGTGCCCGGTGTGCCTGGACGAGTTCGAGGCCGGCGGCGAGGC
GAGGGAGATGCCGTGCAAGCACAGGTTCCACGACGGCTGCATCCTGCCGTGGCTGGAGGC
GCACAGCTCCTGCCCCGTGTGCAGGTACCAGCTGCCCACGGACGACGAGCCCACCGCCGG
CAACGTCGTCGTTGCAGCCGAGGGCGGCGACGAGCTCATTGGCAATGCACGCGGCGGCGG
CGGCGATGGTGATGGCGACGGAGGAAGCAGTGGCAGGAGGCGCTGGCTCTCGTGGCCTTT
TGGCGGGTTATTCTCGCACAGATCGAGCAGGAGGTCCTCCTCGTCGTGACGGCAAAATGC
AGCAAACAATGTGATTAGTTCAGTTGTCTAGTTGAGTAGTTGTATGTCCCTGCATCAGTG
CATTCTTGTATAGTTGGATAGCTGCATTTGTTCTTTGGTCG