Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0320600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:11568470:11569520:-1 gene:Os03g0320600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 11 description:VQ domain containing protein. (Os03t0320600-01)
Sequence

ATGGACGCCGCCTCCTGCGTGGGCGTGGCCCCGGCCGCGCTGCTGTCCAGGTCCTTCTCC
GACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCCCTCTGCGACTCCTCGCCGCTCCCC
GAGCCGACGACGCATCAGTACGTTGCTGCCACCGACGTCGACCTTGGCGCGTGCGGCGTT
GCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAGAACGCCGTGGTGCTGAAAACCCGG
GCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGGCCGGCGGGTGGCGGGCGCGCGGGG
AAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACCACGTACATCAGCACCGACGCGGCC
ACGTTCCGCATCATGGTGCAGCAGGTGACCGGCGCGCAGGTCGAGCCGCAGGACGACGCC
TGCCTCGGCCTCCTCATGCCACCACCGCCCTTCGACGTCGTCGACCCCGCCGCCTTGCTA
CCGGCAGACACCGCGGCGTGCGCGGGCGCGGCCCACGTCGCCACTTGCGTCCCCCACCCT
CTCCACGCTGCCGCTGCTGCGGCGGCAGCGGTGGCTGCCCCGGAGCAGCCGTGCTTCCCG
ACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGA

Peptide Sequence

PEP ID

Os03t0320600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:11568470:11569520:-1 gene:Os03g0320600 transcript:Os03t0320600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 11 description:VQ domain containing protein. (Os03t0320600-01)
Sequence

MDAASCVGVAPAALLSRSFSDAAAIARALHFSLCDSSPLPEPTTHQYVAATDVDLGACGV
AVAAPTPAVSSENAVVLKTRASLSPSARCRLGPAGGGRAGKRRPRPSKRAPTTYISTDAA
TFRIMVQQVTGAQVEPQDDACLGLLMPPPPFDVVDPAALLPADTAACAGAAHVATCVPHP
LHAAAAAAAAVAAPEQPCFPTLDSWNVMYGKDEVV

Transcript Sequence

Transcript ID

Os03t0320600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:11568470:11569520:-1 gene:Os03g0320600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 11 description:VQ domain containing protein. (Os03t0320600-01)
Sequence

ATTCCCACTCGCAACCCACGCTGCCCCACTCTCGCCAACCCCCTCCACGTCCACGATCTG
CCCGCTTTGCAGTGCCCGGGCGCCATGGACGCCGCCTCCTGCGTGGGCGTGGCCCCGGCC
GCGCTGCTGTCCAGGTCCTTCTCCGACGCCGCCGCCATCGCCCGCGCGCTCCACTTCTCC
CTCTGCGACTCCTCGCCGCTCCCCGAGCCGACGACGCATCAGTACGTTGCTGCCACCGAC
GTCGACCTTGGCGCGTGCGGCGTTGCCGTGGCCGCGCCCACGCCTGCAGTGTCGAGCGAG
AACGCCGTGGTGCTGAAAACCCGGGCGTCGTTGTCGCCGTCGGCTCGGTGCCGGCTTGGG
CCGGCGGGTGGCGGGCGCGCGGGGAAGCGGCGGCCGAGGCCGTCGAAGCGGGCGCCCACC
ACGTACATCAGCACCGACGCGGCCACGTTCCGCATCATGGTGCAGCAGGTGACCGGCGCG
CAGGTCGAGCCGCAGGACGACGCCTGCCTCGGCCTCCTCATGCCACCACCGCCCTTCGAC
GTCGTCGACCCCGCCGCCTTGCTACCGGCAGACACCGCGGCGTGCGCGGGCGCGGCCCAC
GTCGCCACTTGCGTCCCCCACCCTCTCCACGCTGCCGCTGCTGCGGCGGCAGCGGTGGCT
GCCCCGGAGCAGCCGTGCTTCCCGACGCTGGACTCGTGGAACGTCATGTACGGCAAGGAC
GAGGTTGTTTGAATTACCAAGGTAGGAGTACTACGTACTTGTAACTAATGAATGATGCAT
GCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGT
AGAGAGAAGCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGT
CGGAGTGTGCTAGCTTAGCTAGTGTAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACC
TTTCTTGTGATGGATTCCTATAGTTGCACTTGCAGATGCGTCTCAATGTCCCATTGATCC
ATTTTGCCCTTCAATCTCTGCTTTTCCGGCC