Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0317100-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:11412715:11416313:1 gene:Os03g0317100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0317100-01)
Sequence	ATGCGTCTCCCGCCCGTCCGCTTCCTGCCGTCGAGCGCGGCGCCGGCGGTGGTGGCGGCG AACGCGCGCATAGCCCACCTCGCCCGGGCGGGGAACATCGAGGGCGCGAGGGCGGCCTTC GAGGCCATGCCCCTCCGCACCACCGCCTCCTACAACGCCCTCCTCGCCGGCTACTTCCGC AACCGCCTGCCGGACGCGGCCCTCGGCCTCTTCCGCCGCATGCCCTCCCGCGACCTCGCC TCCTACAACGCCCTCATATCCGGCCTCTCGCTCCGCCGCCAGACGCTCCCGGACGCCGCC GCCGCGCTCGCCTCCATCCCCTTCCCGCCCTCCGTCGTCTCCTTCACCTCCCTCCTCCGT GGGTACGTGCGCCACGGCCTCCTCGCCGACGCCATCCGCTTGTTCCAGCAGATGCCGGAG CGGAACCACGTCTCTTACACCGTGCTGCTCGGTGGACTCCTTGATGCCGGCCGTGTCAAC GAGGCTCGCAGGCTGTTCGACGAAATGCCTGACAGGGATGTCGTGGCGTGGACAGCCATG CTGTCTGGGTACTGCCAGGCTGGTCGGATCACTGAGGCACGCGCTCTGTTTGATGAAATG CCGAAGAGGAATGTCGTGTCATGGACCGCGATGATCTCCGGATATGCTCAAAACGGTGAG GTGAACCTTGCAAGGAAGCTGTTCGAGGTGATGCCTGAGCGCAATGAGGTCTCGTGGACT GCAATGTTGGTTGGGTACATACAAGCTGGCCATGTTGAGGATGCTGCAGAGCTGTTTAAT GCAATGCCGGAACATCCAGTGGCCGCCTGCAATGCCATGATGGTTGGGTTTGGGCAACGT GGAATGGTGGATGCTGCCAAGACAGTGTTCGAGAAAATGTGTGAGAGAGATGATGGGACA TGGAGTGCCATGATTAAAGCGTATGAGCAGAACGAATTCTTGATGGAGGCACTATCTACC TTCCGTGAGATGTTGTGGAGAGGTGTCCGTCCAAACTACCCATCAGTCATCAGCATACTC ACAGTGTGTGCGGCACTGGCTGTTCTTGATTATGGGAGGGAGGTGCATGCTGCAATGCTG AGATGCTCCTTTGACATGGACGTCTTTGCTGTGTCAGCATTAATCACAATGTATATAAAA TGTGGAAATCTGGATAAGGCCAAGAGGGTCTTTCACACGTTTGAGCCAAAAGATATTGTG ATGTGGAACTCCATGATCACTGGTTATGCTCAACATGGATTGGGGGAGCAAGCACTTGGC ATATTTCATGATATGAGGTTGGCAGGAATGTCGCCTGATGGAATTACTTATATAGGGGCC CTCACAGCTTGTAGCTATACCGGTAAAGTTAAAGAAGGGAGGGAGATTTTTAATTCTATG ACTGTGAATTCTTCCATCCGACCTGGAGCTGAGCATTATTCTTGTATGGTTGATTTACTT GGTCGATCAGGCCTTGTGGAGGAAGCATTTGACTTGATAAAGAATATGCCAGTTGAACCA GATGCTGTCATCTGGGGAGCTCTGATGGGTGCCTGTAGGATGCACAGGAATGCTGAGATT GCTGAGTTTGCTGCTAAGAAGCTATTAGAGCTAGAGCCTGGGAATGCTGGACCGTATGTC TTACTCTCTCACATTTATACATCCGTTGGGAGGTGGGAAGATGCTTCTAAGATGCGGAAA TTCATTAGCTCAAGGAATTTGAACAAGTCACCAGGCTGTAGTTGGATAGAGTACGACAAG AGGGTGCATCTTTTCACATCTGGTGATGTATTAGCACATCCAGAACATGCCGCTATTCTT AGGATATTGGAAAAACTAGATGGGCTATTGATGGAGTCTGGTTACTCGGCTGATGGAAGC TTTGTGCTTCATGATATAGATGAGGAGCAAAAGTCTCATAGCTTGCGGTATCATAGTGAG AGACAGGCTGTGGCATATGGACTACTGAAAATCCCAGAAGGAATGCCCATTCGTGTCATG AAAAACCTCAGGGTTTGTGGTGACTGCCATTCTGCAATAAAGTTGATTGCAAAGATCACT TCTAGGGAAATCATACTAAGAGATGCCAATAGATTCCATCATTTCAAAGATGGGTTTTGC TCATGCAGGGACTACTGGTGA

Peptide Sequence

PEP ID	Os03t0317100-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:11412715:11416313:1 gene:Os03g0317100 transcript:Os03t0317100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0317100-01)
Sequence	MRLPPVRFLPSSAAPAVVAANARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFR NRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLR GYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAM LSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL RILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVM KNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW

Transcript Sequence

Transcript ID	Os03t0317100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:11412715:11416313:1 gene:Os03g0317100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0317100-01)
Sequence	TCCCCAAATTTCTCTTCCGCCAACCGCCATGCGTCTCCCGCCCGTCCGCTTCCTGCCGTC GAGCGCGGCGCCGGCGGTGGTGGCGGCGAACGCGCGCATAGCCCACCTCGCCCGGGCGGG GAACATCGAGGGCGCGAGGGCGGCCTTCGAGGCCATGCCCCTCCGCACCACCGCCTCCTA CAACGCCCTCCTCGCCGGCTACTTCCGCAACCGCCTGCCGGACGCGGCCCTCGGCCTCTT CCGCCGCATGCCCTCCCGCGACCTCGCCTCCTACAACGCCCTCATATCCGGCCTCTCGCT CCGCCGCCAGACGCTCCCGGACGCCGCCGCCGCGCTCGCCTCCATCCCCTTCCCGCCCTC CGTCGTCTCCTTCACCTCCCTCCTCCGTGGGTACGTGCGCCACGGCCTCCTCGCCGACGC CATCCGCTTGTTCCAGCAGATGCCGGAGCGGAACCACGTCTCTTACACCGTGCTGCTCGG TGGACTCCTTGATGCCGGCCGTGTCAACGAGGCTCGCAGGCTGTTCGACGAAATGCCTGA CAGGGATGTCGTGGCGTGGACAGCCATGCTGTCTGGGTACTGCCAGGCTGGTCGGATCAC TGAGGCACGCGCTCTGTTTGATGAAATGCCGAAGAGGAATGTCGTGTCATGGACCGCGAT GATCTCCGGATATGCTCAAAACGGTGAGGTGAACCTTGCAAGGAAGCTGTTCGAGGTGAT GCCTGAGCGCAATGAGGTCTCGTGGACTGCAATGTTGGTTGGGTACATACAAGCTGGCCA TGTTGAGGATGCTGCAGAGCTGTTTAATGCAATGCCGGAACATCCAGTGGCCGCCTGCAA TGCCATGATGGTTGGGTTTGGGCAACGTGGAATGGTGGATGCTGCCAAGACAGTGTTCGA GAAAATGTGTGAGAGAGATGATGGGACATGGAGTGCCATGATTAAAGCGTATGAGCAGAA CGAATTCTTGATGGAGGCACTATCTACCTTCCGTGAGATGTTGTGGAGAGGTGTCCGTCC AAACTACCCATCAGTCATCAGCATACTCACAGTGTGTGCGGCACTGGCTGTTCTTGATTA TGGGAGGGAGGTGCATGCTGCAATGCTGAGATGCTCCTTTGACATGGACGTCTTTGCTGT GTCAGCATTAATCACAATGTATATAAAATGTGGAAATCTGGATAAGGCCAAGAGGGTCTT TCACACGTTTGAGCCAAAAGATATTGTGATGTGGAACTCCATGATCACTGGTTATGCTCA ACATGGATTGGGGGAGCAAGCACTTGGCATATTTCATGATATGAGGTTGGCAGGAATGTC GCCTGATGGAATTACTTATATAGGGGCCCTCACAGCTTGTAGCTATACCGGTAAAGTTAA AGAAGGGAGGGAGATTTTTAATTCTATGACTGTGAATTCTTCCATCCGACCTGGAGCTGA GCATTATTCTTGTATGGTTGATTTACTTGGTCGATCAGGCCTTGTGGAGGAAGCATTTGA CTTGATAAAGAATATGCCAGTTGAACCAGATGCTGTCATCTGGGGAGCTCTGATGGGTGC CTGTAGGATGCACAGGAATGCTGAGATTGCTGAGTTTGCTGCTAAGAAGCTATTAGAGCT AGAGCCTGGGAATGCTGGACCGTATGTCTTACTCTCTCACATTTATACATCCGTTGGGAG GTGGGAAGATGCTTCTAAGATGCGGAAATTCATTAGCTCAAGGAATTTGAACAAGTCACC AGGCTGTAGTTGGATAGAGTACGACAAGAGGGTGCATCTTTTCACATCTGGTGATGTATT AGCACATCCAGAACATGCCGCTATTCTTAGGATATTGGAAAAACTAGATGGGCTATTGAT GGAGTCTGGTTACTCGGCTGATGGAAGCTTTGTGCTTCATGATATAGATGAGGAGCAAAA GTCTCATAGCTTGCGGTATCATAGTGAGAGACAGGCTGTGGCATATGGACTACTGAAAAT CCCAGAAGGAATGCCCATTCGTGTCATGAAAAACCTCAGGGTTTGTGGTGACTGCCATTC TGCAATAAAGTTGATTGCAAAGATCACTTCTAGGGAAATCATACTAAGAGATGCCAATAG ATTCCATCATTTCAAAGATGGGTTTTGCTCATGCAGGGACTACTGGTGAGGTGAATAGTC TGGTCTTTTCCTTTCTCAGCACCTTCCCTTTAGTGATCCTTCCATTTGGATCCAGGTTTC AAAACGTCCATTTGACCGTGAAGTACACCATCCGTTGCAGGCTAACTGCATCTGGTCAAT TGTCCTGTCGAGATACATGATCCACTACTCGGCACTTCAGCCTAAACACTCTATATATTG TGTTTAATTTGGTGGAGCTAAACTTTGGGATAGTTGTAGCATGAAAAACAAGCAAATTTC TGTGGTGGTTCATCAGGCAGGCTTTCTGATCATAAATTTTCTTGTGAATATTGAGTTCAG AAGATATCCATCTAATTTTTGGAACAATCCTGTGGATGATTTGATTGGTTATCAACGATT CAAGAATCAGCATAAGGCAGGCTTTCTGATCATAAATTTTCTTGTGACTGAGTTCAGAAG ATATCCATCTAATTTTTGGAACAATCCTGTGGATGATTTGATTGGTTATCTTATCTACGA TTAAAGATTTAGCAGTAAACAGTTGACCAACAGCGGATCCAGGTAAACCTAGCAGCGTTC TGCCAAAAATGGAATTGTATTACTTTCTAGGATAAAATACTAGAATTATT