Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0314200-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:11242262:11247480:-1 gene:Os03g0314200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os03t0314200-01)
Sequence	ATGGCGGAGGCGATCGCGTCCGCGGGTGGGATCGCCATGGCCGCCTCGACCTCCCTCACG CCGGGCCAGGTCTCTGCTCTTCTGGGATTTCTTTGGGTTTTCACCGCCTGGGCATATGCG GAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCACACTCGGATGTAAATTTA GCAGTAATGGATTCTAGCTCAAACAAAGGAGAGGATCAAGTGATGTTATTGGAGGAGGGT GTCCAAGCACCAGTGCAAAAGCCAGTTTATGCTTCTCTCACATCACAAATGTTCAGACTT TTCTTGTTGGACCAGGCACTTATTCTAGAGAATCGATTGACGTTGAGAGCAATATCTGAG TTTGGAGGTCATCTGCTTTACTTTTACATATGTGATCGCACAAATCTACTGGGAGAGTCT GCGAAGAATTACAGCCGAGATATGTTCCTTTTCCTTTACTTTCTTCTTATTATCGTAGCA GCTATGACTTCTTTCAAGGTCCACCAAGACAAGTCGTCATTCACGGGGAAATCTATACTG TATCTGAATAGGCACCAAACTGAGGAATGGAAGGGTTGGATGCAGGTGCTGTTTTTGATG TACCACTACTTCAATGCTAAAGAGATATACAATGCAATTCGTGTGTTCATTGCTGCATAT GTCTGGATGACTGGATTTGGTAACTTCTCCTATTATTATGTGCGGAAGGATTTCAGCCTT GCACGATTTGCTCAGATGATGTGGCGCCTCAATTTTTTCGTGGCATTCTGTTGTATTGTG CTAAATAATGACTACACCCTCTATTATATTTGCCCTATGCACACACTTTTTACCCTTATG GTTTATGGTGCTCTTGGAATACTAAATAAGTATAACGAGATTGGATCAGTGATGGCTATA AAGTTTGTTGCCTGCTTTTTGGTGGTTATCCTGATATGGGAAATCCCAGGAGTCTTCGAG ATTGTCTGGAGCCCATTCACGTTTCTTCTCGGCTATACTGATCCATCTAAACCTGATCTC CCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGG ATGATTTATGCTTATTACCATCCAACTGTTGAGAAGTGGATGGAGAAGCTTGAAGAAGCT GAAACGAAAACTAAACTCTATATTAAGGCCTTGATAGTTTCAATTGCTTTAACGGCTGGT TGTTTGTGGTACGAGTACATTTATAAGCTAGACAAGATTACCTACAACAAATACCATCCC TATACATCCTGGATCCCCATAACTGTGTACATCTGCTTACGCAACTTCACTCAAGAATTC CGGTGCTGCTCTCTCACACTATTTGCCTGGCTCGGAAAGATTACCTTAGAAACGTACATA TCACAGTTCCATATTTGGCTCAGATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTG ACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCA GTCTCCCATAGGCTATTTGAGTTGACTAACACCTTGAAGATCGCATTTGTGCCTAGTCGT GACAACAAGCGCCTCTCGTACAATTTTGTGGCGGGAATTGCAATTTCAGTGGCGCTATAT TCTTTATCATTTCTTATAGTTGGCGTTGCAGGATACTAG

Peptide Sequence

PEP ID	Os03t0314200-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:11242262:11247480:-1 gene:Os03g0314200 transcript:Os03t0314200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os03t0314200-01)
Sequence	MAEAIASAGGIAMAASTSLTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNL AVMDSSSNKGEDQVMLLEEGVQAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISE FGGHLLYFYICDRTNLLGESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSIL YLNRHQTEEWKGWMQVLFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSL ARFAQMMWRLNFFVAFCCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAI KFVACFLVVILIWEIPGVFEIVWSPFTFLLGYTDPSKPDLPRLHEWHFRSGLDRYIWIVG MIYAYYHPTVEKWMEKLEEAETKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHP YTSWIPITVYICLRNFTQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLL TIIPNYPMLNFMLTTAIYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALY SLSFLIVGVAGY

Transcript Sequence

Transcript ID	Os03t0314200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:11242262:11247480:-1 gene:Os03g0314200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os03t0314200-01)
Sequence	ACCTAATTTTCTTCGTCCTCTCCCTCTCTTCTTCTCTTCTCTTCTCTGCTCGGCTCCTGT ACGCGGCTGGATCCGAGCGGCGCAGGAAGGAGGCGGGGCGGATGCTGTAGAGAGAATGGC GGAGGCGATCGCGTCCGCGGGTGGGATCGCCATGGCCGCCTCGACCTCCCTCACGCCGGG CCAGGTCTCTGCTCTTCTGGGATTTCTTTGGGTTTTCACCGCCTGGGCATATGCGGAGGT TCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCACACTCGGATGTAAATTTAGCAGT AATGGATTCTAGCTCAAACAAAGGAGAGGATCAAGTGATGTTATTGGAGGAGGGTGTCCA AGCACCAGTGCAAAAGCCAGTTTATGCTTCTCTCACATCACAAATGTTCAGACTTTTCTT GTTGGACCAGGCACTTATTCTAGAGAATCGATTGACGTTGAGAGCAATATCTGAGTTTGG AGGTCATCTGCTTTACTTTTACATATGTGATCGCACAAATCTACTGGGAGAGTCTGCGAA GAATTACAGCCGAGATATGTTCCTTTTCCTTTACTTTCTTCTTATTATCGTAGCAGCTAT GACTTCTTTCAAGGTCCACCAAGACAAGTCGTCATTCACGGGGAAATCTATACTGTATCT GAATAGGCACCAAACTGAGGAATGGAAGGGTTGGATGCAGGTGCTGTTTTTGATGTACCA CTACTTCAATGCTAAAGAGATATACAATGCAATTCGTGTGTTCATTGCTGCATATGTCTG GATGACTGGATTTGGTAACTTCTCCTATTATTATGTGCGGAAGGATTTCAGCCTTGCACG ATTTGCTCAGATGATGTGGCGCCTCAATTTTTTCGTGGCATTCTGTTGTATTGTGCTAAA TAATGACTACACCCTCTATTATATTTGCCCTATGCACACACTTTTTACCCTTATGGTTTA TGGTGCTCTTGGAATACTAAATAAGTATAACGAGATTGGATCAGTGATGGCTATAAAGTT TGTTGCCTGCTTTTTGGTGGTTATCCTGATATGGGAAATCCCAGGAGTCTTCGAGATTGT CTGGAGCCCATTCACGTTTCTTCTCGGCTATACTGATCCATCTAAACCTGATCTCCCTCG ATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGAT TTATGCTTATTACCATCCAACTGTTGAGAAGTGGATGGAGAAGCTTGAAGAAGCTGAAAC GAAAACTAAACTCTATATTAAGGCCTTGATAGTTTCAATTGCTTTAACGGCTGGTTGTTT GTGGTACGAGTACATTTATAAGCTAGACAAGATTACCTACAACAAATACCATCCCTATAC ATCCTGGATCCCCATAACTGTGTACATCTGCTTACGCAACTTCACTCAAGAATTCCGGTG CTGCTCTCTCACACTATTTGCCTGGCTCGGAAAGATTACCTTAGAAACGTACATATCACA GTTCCATATTTGGCTCAGATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAAT AATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCAGTCTC CCATAGGCTATTTGAGTTGACTAACACCTTGAAGATCGCATTTGTGCCTAGTCGTGACAA CAAGCGCCTCTCGTACAATTTTGTGGCGGGAATTGCAATTTCAGTGGCGCTATATTCTTT ATCATTTCTTATAGTTGGCGTTGCAGGATACTAGCAAGTCCTATAGTTGGCCTTATGTGG CATCTGCAAAGCTGATTTGATTACCTTCACGGCTTGGAGACTTCCATTGTTTCACCCTGA GCTTCGTTTTTTATGAGTGTTACATGGTGAAAAGGAGTCGGGATGCAGAACAAAAAATGA TCAGGGAGAGTGTAACATGTAGCATTAAACCCCAAATGGGAATATAATGAAGTAGATATA TGCCTGTATAGCCGTTGAAAATTGAAATGCATATGTAAGCGAGCTCGTTGGCTATAGAAA CTTCTCTCTCTTGGCCTCTTGGCCCGTTGAGATTGAGATTTGAAATAGGATAGTGGAAAC ATGTAAGAATATTATTCTTTTGACCCTTCTCGAAATAACGTTGTTAGCTTGGTGCAAGCT GGGT