Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0309200-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:11020152:11028141:1 gene:Os03g0309200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME B description:Similar to Phytochrome B. (Os03t0309200-01);Similar to Phytochrome B. (Os03t0309200-02)
Sequence	GGTGAGGTGAGGCGAGGAAAAAATCGGACGCACCCGCAGTACACCCTGGACGCGCGCCTC CACGCCGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACACGCAGTCGCTG CGTGCGTCGCCCACCCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCCCGCATCCAG CGCGGCGGGCACATACAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTC CGCCTCCTCGCCTACTCCGAGAACACCGCCGACCTGCTCGACCTGTCGCCCCACCACTCC GTCCCCTCGCTCGACTCCTCCGCGGTGCCTCCCCCCGTCTCGCTCGGCGCAGACGCGCGC CTCCTTTTCGCCCCCTCGTCCGCCGTCCTCCTCGAGCGCGCCTTCGCCGCGCGCGAGATC TCGCTGCTCAACCCGCTCTGGATCCACTCCAGGGTCTCCTCTAAACCCTTCTACGCCATC CTCCACCGCATCGATGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAGGATCCT GCACTCTCCATCGCTGGCGCAGTCCAGTCTCAGAAGCTCGCGGTCCGTGCCATCTCCCGC CTCCAGGCGCTTCCCGGCGGTGACGTCAAGCTCCTTTGCGACACCGTTGTTGAGTATGTT AGAGAGCTCACAGGTTATGACCGCGTTATGGTGTACAGGTTCCATGAGGATGAGCATGGA GAAGTCGTTGCCGAGAGCCGGCGCAATAACCTTGAGCCCTACATCGGGTTGCATTATCCT GCTACAGATATCCCACAGGCATCACGCTTCCTGTTCCGGCAGAACCGTGTGCGGATGATT GCTGATTGCCATGCTGCGCCGGTGAGGGTCATCCAGGATCCTGCACTAACACAGCCGCTG TGCTTGGTTGGGTCCACGCTGCGTTCGCCGCATGGTTGCCATGCGCAGTATATGGCGAAC ATGGGTTCCATTGCATCTCTTGTTATGGCAGTGATCATTAGTAGTGGTGGGGATGATGAT CATAACATTTCACGGGGCAGCATCCCGTCGGCGATGAAGTTGTGGGGGTTGGTAGTATGC CACCACACATCTCCACGGTGCATCCCTTTCCCACTACGGTATGCATGCGAGTTCCTCATG CAAGCCTTTGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCACACCAACTGTCAGAGAAA CACATTCTGCGGACGCAGACACTGCTGTGTGATATGCTACTCCGGGATTCACCAACTGGC ATTGTCACACAAAGCCCCAGCATCATGGACCTTGTGAAGTGTGATGGTGCTGCTCTGTAT TACCATGGGAAGTACTACCCTCTTGGTGTCACTCCCACAGAAGTTCAGATTAAGGACATC ATCGAGTGGTTGACTATGTGCCATGGAGACTCCACAGGGCTCAGCACAGATAGCCTTGCT GATGCAGGCTACCCTGGTGCTGCTGCACTAGGAGATGCAGTGAGTGGAATGGCGGTAGCA TATATCACGCCAAGTGATTATTTGTTTTGGTTCCGGTCACACACAGCTAAGGAGATAAAG TGGGGTGGTGCAAAGCATCATCCAGAGGATAAGGATGATGGACAACGAATGCATCCACGA TCATCGTTCAAGGCATTTCTTGAAGTTGTGAAGAGTAGGAGCTTACCATGGGAGAATGCG GAGATGGATGCAATACATTCCTTGCAGCTCATATTGCGGGACTCTTTCAGAGATTCTGCA GAGGGCACAAGTAACTCAAAAGCCATAGTGAATGGCCAGGTTCAGCTTGGGGAGCTAGAA TTACGGGGAATAGATGAGCTTAGCTCGGTAGCAAGGGAGATGGTTCGGTTGATCGAGACA GCAACAGTACCCATCTTTGCAGTAGATACTGATGGATGTATAAATGGTTGGAATGCAAAG GTTGCTGAGCTGACAGGCCTCTCTGTTGAGGAAGCAATGGGCAAATCATTGGTAAATGAT CTCATCTTCAAGGAATCTGAGGAAACAGTAAACAAGCTACTCTCACGAGCTTTAAGAGGT GATGAAGACAAAAATGTAGAGATAAAGTTGAAGACATTCGGGCCAGAACAATCTAAAGGA CCAATATTCGTTATTGTGAATGCTTGTTCTAGCAGGGATTACACTAAAAATATTGTTGGT GTTTGTTTTGTTGGCCAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTATCAAC ATACAAGGGGATTACAAGGCTATCGTACACAACCCTAATCCTCTCATACCCCCAATATTT GCTTCAGATGAGAATACTTGTTGTTCGGAGTGGAACACAGCAATGGAAAAACTCACAGGA TGGTCAAGAGGGGAAGTTGTTGGTAAGCTTCTGGTCGGTGAGGTCTTTGGTAATTGTTGT CGACTCAAGGGCCCAGATGCATTAACGAAATTCATGATTGTCCTACACAACGCTATAGGA GGACAGGATTGTGAAAAGTTCCCCTTTTCATTTTTTGACAAGAATGGGAAATACGTGCAG GCCTTATTGACTGCAAACACGAGGAGCAGAATGGATGGTGAGGCCATAGGAGCCTTCTGT TTCTTGCAGATTGCAAGTCCTGAATTACAGCAAGCCTTTGAGATTCAGAGACACCATGAA AAGAAGTGTTATGCAAGGATGAAGGAATTGGCTTACATTTACCAGGAAATAAAGAATCCT CTCAACGGTATCCGATTTACAAACTCGTTATTGGAGATGACTGATCTAAAGGATGACCAG AGGCAGTTTCTTGAAACCAGCACTGCTTGTGAGAAACAGATGTCCAAAATTGTTAAGGAT GCTAGCCTCCAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAGGTGAATTTTCACTA GGTAGTGTTATGAATGCTGTTGTCAGCCAAGTGATGATACAGTTGAGAGAAAGAGATTTA CAACTTATTCGAGATATCCCTGATGAAATTAAAGAAGCCTCAGCATATGGTGACCAATAT AGAATTCAACAAGTTTTATGTGACTTTTTGCTAAGCATGGTGAGGTTTGCTCCAGCTGAA AATGGCTGGGTGGAGATACAGGTCAGACCAAATATAAAACAAAATTCTGATGGAACAGAC ACAATGCTTTTCCTCTTCAGGTTTGCCTGTCCTGGCGAAGGCCTTCCCCCAGAGATTGTT CAAGACATGTTTAGTAACTCCCGCTGGACAACCCAAGAGGGTATTGGCCTAAGCATATGC AGGAAGATCCTAAAATTGATGGGTGGCGAGGTCCAATATATAAGGGAGTCGGAGCGGAGT TTCTTCCATATCGTACTTGAGCTGCCCCAGCCTCAGCAAGCAGCAAGTAGGGGGACAAGC TGA

Peptide Sequence

PEP ID	Os03t0309200-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:11020152:11028141:1 gene:Os03g0309200 transcript:Os03t0309200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME B description:Similar to Phytochrome B. (Os03t0309200-01);Similar to Phytochrome B. (Os03t0309200-02)
Sequence	GEVRRGKNRTHPQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQ RGGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADAR LLFAPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDP ALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHG EVVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPL CLVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVC HHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTG IVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLA DAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPR SSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELE LRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVND LIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVG VCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTG WSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQ ALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNP LNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSL GSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAE NGWVEIQVRPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSIC RKILKLMGGEVQYIRESERSFFHIVLELPQPQQAASRGTS

Transcript Sequence

Transcript ID	Os03t0309200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:11020152:11028141:1 gene:Os03g0309200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME B description:Similar to Phytochrome B. (Os03t0309200-01);Similar to Phytochrome B. (Os03t0309200-02)
Sequence	GCAATCCCACTCTCATCTCCCTCAGTTACTGCCTTGCTCCCCAACCCCAGGAGCAAGCAC AAGTCCACTGCGTGCGTGCGAGCGATGACTCCGATAACCGCAGGGGCGGTGAGGTGAGGT GAGGCGAGGAAAAAATCGGACGCACCCGCAGTACACCCTGGACGCGCGCCTCCACGCCGT GTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACACGCAGTCGCTGCGTGCGTC GCCCACCCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCCCGCATCCAGCGCGGCGG GCACATACAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCT CGCCTACTCCGAGAACACCGCCGACCTGCTCGACCTGTCGCCCCACCACTCCGTCCCCTC GCTCGACTCCTCCGCGGTGCCTCCCCCCGTCTCGCTCGGCGCAGACGCGCGCCTCCTTTT CGCCCCCTCGTCCGCCGTCCTCCTCGAGCGCGCCTTCGCCGCGCGCGAGATCTCGCTGCT CAACCCGCTCTGGATCCACTCCAGGGTCTCCTCTAAACCCTTCTACGCCATCCTCCACCG CATCGATGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAGGATCCTGCACTCTC CATCGCTGGCGCAGTCCAGTCTCAGAAGCTCGCGGTCCGTGCCATCTCCCGCCTCCAGGC GCTTCCCGGCGGTGACGTCAAGCTCCTTTGCGACACCGTTGTTGAGTATGTTAGAGAGCT CACAGGTTATGACCGCGTTATGGTGTACAGGTTCCATGAGGATGAGCATGGAGAAGTCGT TGCCGAGAGCCGGCGCAATAACCTTGAGCCCTACATCGGGTTGCATTATCCTGCTACAGA TATCCCACAGGCATCACGCTTCCTGTTCCGGCAGAACCGTGTGCGGATGATTGCTGATTG CCATGCTGCGCCGGTGAGGGTCATCCAGGATCCTGCACTAACACAGCCGCTGTGCTTGGT TGGGTCCACGCTGCGTTCGCCGCATGGTTGCCATGCGCAGTATATGGCGAACATGGGTTC CATTGCATCTCTTGTTATGGCAGTGATCATTAGTAGTGGTGGGGATGATGATCATAACAT TTCACGGGGCAGCATCCCGTCGGCGATGAAGTTGTGGGGGTTGGTAGTATGCCACCACAC ATCTCCACGGTGCATCCCTTTCCCACTACGGTATGCATGCGAGTTCCTCATGCAAGCCTT TGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCACACCAACTGTCAGAGAAACACATTCT GCGGACGCAGACACTGCTGTGTGATATGCTACTCCGGGATTCACCAACTGGCATTGTCAC ACAAAGCCCCAGCATCATGGACCTTGTGAAGTGTGATGGTGCTGCTCTGTATTACCATGG GAAGTACTACCCTCTTGGTGTCACTCCCACAGAAGTTCAGATTAAGGACATCATCGAGTG GTTGACTATGTGCCATGGAGACTCCACAGGGCTCAGCACAGATAGCCTTGCTGATGCAGG CTACCCTGGTGCTGCTGCACTAGGAGATGCAGTGAGTGGAATGGCGGTAGCATATATCAC GCCAAGTGATTATTTGTTTTGGTTCCGGTCACACACAGCTAAGGAGATAAAGTGGGGTGG TGCAAAGCATCATCCAGAGGATAAGGATGATGGACAACGAATGCATCCACGATCATCGTT CAAGGCATTTCTTGAAGTTGTGAAGAGTAGGAGCTTACCATGGGAGAATGCGGAGATGGA TGCAATACATTCCTTGCAGCTCATATTGCGGGACTCTTTCAGAGATTCTGCAGAGGGCAC AAGTAACTCAAAAGCCATAGTGAATGGCCAGGTTCAGCTTGGGGAGCTAGAATTACGGGG AATAGATGAGCTTAGCTCGGTAGCAAGGGAGATGGTTCGGTTGATCGAGACAGCAACAGT ACCCATCTTTGCAGTAGATACTGATGGATGTATAAATGGTTGGAATGCAAAGGTTGCTGA GCTGACAGGCCTCTCTGTTGAGGAAGCAATGGGCAAATCATTGGTAAATGATCTCATCTT CAAGGAATCTGAGGAAACAGTAAACAAGCTACTCTCACGAGCTTTAAGAGGTGATGAAGA CAAAAATGTAGAGATAAAGTTGAAGACATTCGGGCCAGAACAATCTAAAGGACCAATATT CGTTATTGTGAATGCTTGTTCTAGCAGGGATTACACTAAAAATATTGTTGGTGTTTGTTT TGTTGGCCAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTATCAACATACAAGG GGATTACAAGGCTATCGTACACAACCCTAATCCTCTCATACCCCCAATATTTGCTTCAGA TGAGAATACTTGTTGTTCGGAGTGGAACACAGCAATGGAAAAACTCACAGGATGGTCAAG AGGGGAAGTTGTTGGTAAGCTTCTGGTCGGTGAGGTCTTTGGTAATTGTTGTCGACTCAA GGGCCCAGATGCATTAACGAAATTCATGATTGTCCTACACAACGCTATAGGAGGACAGGA TTGTGAAAAGTTCCCCTTTTCATTTTTTGACAAGAATGGGAAATACGTGCAGGCCTTATT GACTGCAAACACGAGGAGCAGAATGGATGGTGAGGCCATAGGAGCCTTCTGTTTCTTGCA GATTGCAAGTCCTGAATTACAGCAAGCCTTTGAGATTCAGAGACACCATGAAAAGAAGTG TTATGCAAGGATGAAGGAATTGGCTTACATTTACCAGGAAATAAAGAATCCTCTCAACGG TATCCGATTTACAAACTCGTTATTGGAGATGACTGATCTAAAGGATGACCAGAGGCAGTT TCTTGAAACCAGCACTGCTTGTGAGAAACAGATGTCCAAAATTGTTAAGGATGCTAGCCT CCAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAGGTGAATTTTCACTAGGTAGTGT TATGAATGCTGTTGTCAGCCAAGTGATGATACAGTTGAGAGAAAGAGATTTACAACTTAT TCGAGATATCCCTGATGAAATTAAAGAAGCCTCAGCATATGGTGACCAATATAGAATTCA ACAAGTTTTATGTGACTTTTTGCTAAGCATGGTGAGGTTTGCTCCAGCTGAAAATGGCTG GGTGGAGATACAGGTCAGACCAAATATAAAACAAAATTCTGATGGAACAGACACAATGCT TTTCCTCTTCAGGTTTGCCTGTCCTGGCGAAGGCCTTCCCCCAGAGATTGTTCAAGACAT GTTTAGTAACTCCCGCTGGACAACCCAAGAGGGTATTGGCCTAAGCATATGCAGGAAGAT CCTAAAATTGATGGGTGGCGAGGTCCAATATATAAGGGAGTCGGAGCGGAGTTTCTTCCA TATCGTACTTGAGCTGCCCCAGCCTCAGCAAGCAGCAAGTAGGGGGACAAGCTGATATGG TGTATGCTCGTCGCTAACCTCGCATAACTATTCGGTCAACCAGGTGACCTGGGATCTTCT GATGGAGAACCCAGTTTATGAGAGTTCCAGAAACCAACATTTCGTCCACTCTGATGAAGC ACATCTGAACTTTGGAACGGCATCGGTGATTCTCGGTGTCGAGGTGGTCCCTCCAGTCTC CTGATTCCTGGCATGCCCGACTGTAAGTTCAGCTTTGGACGATGTTGTTCTATTAGAGTT CTATGGCGGCAAGCAATGCACACTGACGGTCATGTAACTCGTAGCATAGGCCCACTACCA CTTGGTTGAAGTACATATATGTTCTAAAAGCTGCCATGTATATAACATCGGTTATATATG TACTACGTGCATAAGGAGAGCTGTGCAGCTCCCAGGGTGGTATTTTGTAGGGCTTCCCAA GCCTATGACATCTTATT