Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0308800-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:10992850:10997553:-1 gene:Os03g0308800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0308800-01);Hypothetical conserved gene. (Os03t0308800-02);Hypothetical conserved gene. (Os03t0308800-03)
Sequence

ATGGCGATGCGGCTCTTCCCGTCCTCGTCTCCGCTCCCGCCGCCGCCGCCTCTGCTCCCG
AGCCCCAGCGCGAAGGCACCGCCGTCCGCGCCCTTCTCACTCTCCCTCCGCCTCCGCCGC
GCGCGGGTGGCAGCCTCCGCGGCCGCTGCGGCGGGGGGCCCCGAGAGGGGGGCGGGCGGG
TACGAGGGGGATGCGGAAGGCGAGGGCAGCAGCGGGGCGTTCGACAGGGGAATGTCGGAG
ATCGCGAGGAAGGTGCCTCTCTTCGAGCCGGCGAGGGGCGACGCCGCGGCGGTCGCCGGC
GAGCGGCCGCTGCCCATCAACCTCGAGCTCTGGCTCTACCGCGCAAAGGTGCACACGCGG
AAGTACGAGTTCGCCGACGCGGAGAAGCTCCTAAACCAGTGCATCATGTATTGGCCGGAA
GACGGGCGTCCATATGTGGCGCTTGGGAAGCTATACAGTAAGCAGTCGAGGTTTGACAAG
GCTAGAGCGGCTTATGAAAGGGGTTGCCAAGCGGCACAAGGTGAAAACCCGTATATTTGG
CAGTGTTGGGCAGTCCTAGAACGCAAAGGTGGGAATATTCGAAGAGCACGGGAGTTATTT
GATGCTGCTACTGTAGCTGATGCAAAGCATATTGCAGCTTGGCATGGGTGGGCTATTTTA
GAAATCAAGCAAGGAAACATTAAAAAGGCTCGAAATCTACTTGCAAAAGGTCTAAAATAT
TGTGGAGGAAATGAGTACATTTACCAGACTCTTGCTCTGCTTGAGGCTAGAGCAGAGCGC
TTTGAACAAGCACGAACTTTATTCCAACAAGCTACCCAATGCAATCCCAAAAGCTGTGCA
AGTTGGCTATAG

Peptide Sequence

PEP ID

Os03t0308800-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:10992850:10997553:-1 gene:Os03g0308800 transcript:Os03t0308800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0308800-01);Hypothetical conserved gene. (Os03t0308800-02);Hypothetical conserved gene. (Os03t0308800-03)
Sequence

MAMRLFPSSSPLPPPPPLLPSPSAKAPPSAPFSLSLRLRRARVAASAAAAAGGPERGAGG
YEGDAEGEGSSGAFDRGMSEIARKVPLFEPARGDAAAVAGERPLPINLELWLYRAKVHTR
KYEFADAEKLLNQCIMYWPEDGRPYVALGKLYSKQSRFDKARAAYERGCQAAQGENPYIW
QCWAVLERKGGNIRRARELFDAATVADAKHIAAWHGWAILEIKQGNIKKARNLLAKGLKY
CGGNEYIYQTLALLEARAERFEQARTLFQQATQCNPKSCASWL

Transcript Sequence

Transcript ID

Os03t0308800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10992850:10997553:-1 gene:Os03g0308800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os03t0308800-01);Hypothetical conserved gene. (Os03t0308800-02);Hypothetical conserved gene. (Os03t0308800-03)
Sequence

CTGCTTTGCTACGGCCGGAGCGGCAGAGCACACTCCGGCGAGGGGGGCCATGGCGATGCG
GCTCTTCCCGTCCTCGTCTCCGCTCCCGCCGCCGCCGCCTCTGCTCCCGAGCCCCAGCGC
GAAGGCACCGCCGTCCGCGCCCTTCTCACTCTCCCTCCGCCTCCGCCGCGCGCGGGTGGC
AGCCTCCGCGGCCGCTGCGGCGGGGGGCCCCGAGAGGGGGGCGGGCGGGTACGAGGGGGA
TGCGGAAGGCGAGGGCAGCAGCGGGGCGTTCGACAGGGGAATGTCGGAGATCGCGAGGAA
GGTGCCTCTCTTCGAGCCGGCGAGGGGCGACGCCGCGGCGGTCGCCGGCGAGCGGCCGCT
GCCCATCAACCTCGAGCTCTGGCTCTACCGCGCAAAGGTGCACACGCGGAAGTACGAGTT
CGCCGACGCGGAGAAGCTCCTAAACCAGTGCATCATGTATTGGCCGGAAGACGGGCGTCC
ATATGTGGCGCTTGGGAAGCTATACAGTAAGCAGTCGAGGTTTGACAAGGCTAGAGCGGC
TTATGAAAGGGGTTGCCAAGCGGCACAAGGTGAAAACCCGTATATTTGGCAGTGTTGGGC
AGTCCTAGAACGCAAAGGTGGGAATATTCGAAGAGCACGGGAGTTATTTGATGCTGCTAC
TGTAGCTGATGCAAAGCATATTGCAGCTTGGCATGGGTGGGCTATTTTAGAAATCAAGCA
AGGAAACATTAAAAAGGCTCGAAATCTACTTGCAAAAGGTCTAAAATATTGTGGAGGAAA
TGAGTACATTTACCAGACTCTTGCTCTGCTTGAGGCTAGAGCAGAGCGCTTTGAACAAGC
ACGAACTTTATTCCAACAAGCTACCCAATGCAATCCCAAAAGCTGTGCAAGTTGGCTATA
GGCATGGGCTCAGGTAGAAATTCGTGCAGAAAACAATGCCATGGCAAGAAAACTCTTTGA
GAAAGCAGTCCAGGCAAGTCCTAAGAACAGATTTTCATGGCATGTCTGGGCACTATTTGA
AGCAGAACAAGGTAGCATCGACAAAGCAAGGAAGTTACTTAAGATTGGTCATGCTGTGAA
CCCTAGGGACCCTGTGATTCTTCAGTCTCTTGCACTACTGGAATACAACTACTCATCTCC
AAATACCGCCCGTGTTTTATTTAGAAAGGCATCTCAAATTGATCCTAGGCACCAACCAGT
TTGGATAGTATGGATTTTCTGTGCTTATCTCTCTTTTTTTTATAAGTAATATATTACTCA
TTTGAGCCGCATTTGTTTTTTTACACCTCTGGTTAAATTAACTTGTAGGCTTTGTTTTAG
TATTATTTACCTGACATTTCGCAAATAGCTATGATTAATTAGTTTATGGCACTTCTTGAT
GTACCTTGCACACTTGAGCTGCATCTTGCAACTTGCAAGTGCTCTGGCTGTTCACCTTCC
TGTCACAAATCACAACTGAATATGCACACGATACAAATAATTTGGGATTTGATGGATGTA
AAGGTTCAGTTGAGTGCAGTTGTCTGAATTATTTTGTTTTAGTTACTTTCAAGATGCTAT
ATATCTCATCGTTACATTTGTCCATATTTGTGCTCATTTAGGCTGTTACTTGGGATCTCC
CGTTCAACACTACCTTTAGAATTTCGTTTTTCTATTTGCACTTATTTAGACTTGTGCAAA
GCACTATATATCTTACAATCAAGGAAGCATCGCATGTTCCTGGCCAGAGTAAAGTAAAAA
TATTTGTTATGAACTGTTAGTTGGTAGAGGTGGTATTAAGTGAGCAAATCTATTACACCA
ATTTTAAATCCCTAGATGGATCTGTCTTGTTTTATCTTGCAAACTGTCACGTTTGCATTT
GTTTATGGAATCTCTTTTATTTGGACTATCTTTGAAGCTTAGCTCTGACTTATGGATCAT
GTTATAGGCTTGGGGGTGGATGGAATGGAAAGAAGGAAACGCCAGAACAGCAAGGACACT
GTATCAAAGAGCTTTGTCAGTTAATTCAACTAATGAATGTGCTGCTCGATGTCTTCAGGC
TTGGGGAGTCCTAGAACAGCGGGCCGGTAACTACACCGCTGCCAGAAGATTGCTGAGATC
TTCACTGAACATAAATTCTCAGAGTGAGGTAACATGGATGACATGGGCTGCACTAGAGGA
CGAACAGGGTGATCCAGTTCGAGCTGAAGAAATACGGAACATCTATTTTCAGCAGCGTAC
CGAGGTTGTGGATGATGCCTCCTGGGTCATGGGCTTCCTCGACATCATTGATCCTGCCTT
AGACAGCGTGAAGAAGCTCCTAAACATAGACCAGCCTTCGGGGCCTGCAACACGAGACAA
TCCGAAAAGCACTGGAGAGCCAAGCAATACAGCTACCGTCCGGACTTCTGCCGATGCAGA
GTTTTCTGGCGGTTCAAGAGCAGAAGGATCGGACGCTTCGGACCTTGCTAACGCCGATGA
CAAGGAGAGCGATGACGCTGCAGAGACACCAGAGAGCGATTTCGACGTGGATGGATTCAT
CAGGAGGCGGCTAGCCCTGGACCCGGCCGAGCTGGACGCGGTGCTTGAGGGTTCTGATCC
CAGGGGAGTTGTTTCCAGGAGGAGGACGCAGAGGTTGCCCAGGAAGCCCCTTCCTCTTCT
CCCTGTTCCGTAAATATTTCCACTTCAGTTCAACAATGCACATTTGCCATCTACGCCGTG
CGAAGCATCGACCACTAACAGTAACAGGTACCGTGACTCGCGAGATAGTTGAACATACAT
ATCTGTGTATATCTCTCAGAAGAAGAGCGCGGCGGCTGCCATTAGCAGCCACATGTTTGT
TACTAGAGTTGTTATTGGTCCACCCAGGTGTATGTAATTCTATCATTCTTCAGGAGCAGT
GTATCTGTGTACATAAGCGCAATCTATCAATTTGTATGTGCTAGTGAAGAATTCAAAATC
TGCGGATATCACTTCAATCC