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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0308100-03
CDS Infomation

cds chromosome:IRGSP-1.0:3:10966803:10969724:-1 gene:Os03g0308100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHLOROPLAST PROTEASE 5 description:Peptidase S14, ClpP family protein. (Os03t0308100-01);Peptidase S14, ClpP family protein. (Os03t0308100-02);Peptidase S14, ClpP family protein. (Os03t0308100-03)
Sequence

ATGGCGACCACCACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGC
TCGAACGCGAACCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGG
GCCGTGGCGACCGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATT
TGGTCGATCAGGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCG
TCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGC
CAGCTCTTCCAGCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAAC
ATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATG
TATGTGAATTCTCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAG
CATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTT
CTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATC
CATCAACCTCTCGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAG
ATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTA
GATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAG
TATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCT
TCTAGTTAG

Peptide Sequence

PEP ID

Os03t0308100-03
PEP Infomation

pep chromosome:IRGSP-1.0:3:10966803:10969724:-1 gene:Os03g0308100 transcript:Os03t0308100-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHLOROPLAST PROTEASE 5 description:Peptidase S14, ClpP family protein. (Os03t0308100-01);Peptidase S14, ClpP family protein. (Os03t0308100-02);Peptidase S14, ClpP family protein. (Os03t0308100-03)
Sequence

MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVATAAAAAGHGAAHQRSGI
WSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQLFQHRIIRCGGPVEDDMAN
IIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAF
LLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPL
DKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS

Transcript Sequence

Transcript ID

Os03t0308100-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10966803:10969724:-1 gene:Os03g0308100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHLOROPLAST PROTEASE 5 description:Peptidase S14, ClpP family protein. (Os03t0308100-01);Peptidase S14, ClpP family protein. (Os03t0308100-02);Peptidase S14, ClpP family protein. (Os03t0308100-03)
Sequence

GCGCAACCAAAGCCCCCACCCTCGCCCAAAACCCCCACGAGCCGCGGCCATGGCGACCAC
CACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGCTCGAACGCGAA
CCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGGGCCGTGGCGAC
CGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG
GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGA
ACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGCCAGCTCTTCCA
GCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGC
CCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATGTATGTGAATTC
TCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAGCATATCAGACC
TGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTTCTGCTTAGTGC
TGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCT
CGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCA
CAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAA
CGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAGTATGGTCTAAT
TGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAGCC
ATGGAGTGCTCAATCTCCACGGAGCATTTTTTGGTTATCTTTTAGAACTGTTATTGCATC
CACTGTTTTTATTAGCTTGGCAAGATAGTTTTGCGATTCCACAAGCAACCACATCCTGAG
GCTTCAAAGTTTGTACAATACAGATGTACTACTAGGAGGATATCTTCTGCGATGAATATT
GCAACTTATTTGATGTACTATTAGGAGGATATCTTCTGCGATGAATATTGCAACTTATTT
GAT