Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0300700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:10575398:10576700:-1 gene:Os03g0300700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon gag protein family protein. (Os03t0300700-01)
Sequence

ATGGAGGCGAAGCTGGACCGCATCGCGGAGCAGCTGAAGGCGCTGCCCTTGCTCAGCCAG
GTGGTCGAGGGGCACCAACATCGCCTCGAGGAGCTGTCCAAGCAGATCGCCGTTGCGGCG
GCGCTGGTGGAGGACGTGAAGAAGGAGCAGGCGGCGGCGGCGGCGTCGCGCGCCGCCAGG
ATCGACGGCTACTCGGGAGGGTTCTTTCGTCTGGCGAAGCTGAAGTTCCCCACTTTCAGC
GGGACGTTCCCGCGCCTGTGGATCACCAAGTGCACGCGCTACTTCGAGTTCTACGGCATG
CCAATGAAGATGTGGGTTTCCTGGGCTTCGATGCACATGGAGGGGATGGCTGAGCTGTGG
ATGATGACCTATGAGAAGCGCCATGAGCGTGATTGGGGTCGGTTCTGTGAGGCCGTGGAG
GAGAGATTTGGGCCCTATGATCACAAGCAGAAGCTCACGGCACTCTTGGATCTGAGGCAG
GAGGGGATCATGACAGTGAGCGAGTACAGAGACCAGTTCGAGGAGCGCTTGTACCATGCC
AAGCTGTTCGATCCAGTCTCCAGCAACTGCTTCGACGTGGCATTATTCATAAGAGGCCTG
CGAGAAGAGATCAGAGATAGGATGTGGCAGCAAACTCCTGCTACCGTGGATGCTGCTGCC
CAATCGGCTCTGGTGCAAGAGGCGTTGTATAACTTGGAAATGCAGAGAGCTCAGAGGGAC
CCGTATAAAGAATGA

Peptide Sequence

PEP ID

Os03t0300700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:10575398:10576700:-1 gene:Os03g0300700 transcript:Os03t0300700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon gag protein family protein. (Os03t0300700-01)
Sequence

MEAKLDRIAEQLKALPLLSQVVEGHQHRLEELSKQIAVAAALVEDVKKEQAAAAASRAAR
IDGYSGGFFRLAKLKFPTFSGTFPRLWITKCTRYFEFYGMPMKMWVSWASMHMEGMAELW
MMTYEKRHERDWGRFCEAVEERFGPYDHKQKLTALLDLRQEGIMTVSEYRDQFEERLYHA
KLFDPVSSNCFDVALFIRGLREEIRDRMWQQTPATVDAAAQSALVQEALYNLEMQRAQRD
PYKE

Transcript Sequence

Transcript ID

Os03t0300700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10575398:10576700:-1 gene:Os03g0300700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon gag protein family protein. (Os03t0300700-01)
Sequence

GGAGAAGTGCCCACCGCTTCCGCGTGCTCCGCCGCAGCAGGTTGCAGCGCAACCGGCGAC
GCCGACGAGACGAGACGATCGAACGAAGGCCAAGCAACCTACGGTTCTCCCCGACGGCAA
GATGGAGGCGAAGCTGGACCGCATCGCGGAGCAGCTGAAGGCGCTGCCCTTGCTCAGCCA
GGTGGTCGAGGGGCACCAACATCGCCTCGAGGAGCTGTCCAAGCAGATCGCCGTTGCGGC
GGCGCTGGTGGAGGACGTGAAGAAGGAGCAGGCGGCGGCGGCGGCGTCGCGCGCCGCCAG
GATCGACGGCTACTCGGGAGGGTTCTTTCGTCTGGCGAAGCTGAAGTTCCCCACTTTCAG
CGGGACGTTCCCGCGCCTGTGGATCACCAAGTGCACGCGCTACTTCGAGTTCTACGGCAT
GCCAATGAAGATGTGGGTTTCCTGGGCTTCGATGCACATGGAGGGGATGGCTGAGCTGTG
GATGATGACCTATGAGAAGCGCCATGAGCGTGATTGGGGTCGGTTCTGTGAGGCCGTGGA
GGAGAGATTTGGGCCCTATGATCACAAGCAGAAGCTCACGGCACTCTTGGATCTGAGGCA
GGAGGGGATCATGACAGTGAGCGAGTACAGAGACCAGTTCGAGGAGCGCTTGTACCATGC
CAAGCTGTTCGATCCAGTCTCCAGCAACTGCTTCGACGTGGCATTATTCATAAGAGGCCT
GCGAGAAGAGATCAGAGATAGGATGTGGCAGCAAACTCCTGCTACCGTGGATGCTGCTGC
CCAATCGGCTCTGGTGCAAGAGGCGTTGTATAACTTGGAAATGCAGAGAGCTCAGAGGGA
CCCGTATAAAGAATGAGATGCCGGCCTCTGTCGATTTGCTCCGGTGAACTGTGGGAGTAG
TGCTACTGTGTTGTTTTTATCATGTCGATGGTCTTTGGTTCGATTATGCTGATTAGTTTG
AGGAAGGTCCTTGGGAATTTTGGGATTCAGTTATTTCTAGCATGTCGATGGTCTTTGGTT
CGATTGTGGTGCTCAGTCTGAAGAAGGTCCTTAGGATTTTTGGGATTCAGTTATGCGTTG
CTTCTGAAGATCTTGGTTAGTTGGTTAGATGCGAATTTTC