Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0300300-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:10556232:10561713:1 gene:Os03g0300300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-68 description:WD40 repeat-like domain containing protein. (Os03t0300300-01)
Sequence

ATGGCGCCCGCGGCCGCCACCATCCGCGACCTGCTCACCTCCTTCAGCCCCGCCGCGGAC
TTCCTCGCCCTCTCCTCTGGCGACGGCCGCATCAAGGTATGGGACGCCGTGCGCGGCCAC
CTTCAGACCGAGTTCGCTGATATCCCGCCGGTGGAGGTGGGCGGCGGCGCGCGCGCCCCC
GGGGCGAAGCGCGGTCACCTCGCACTGGACTACACCTGCATGAAGTGGGTACAGCTATCG
AGCAAGAAGAAGCGGAAGGCAGGGAGTTCGCTGCTGGTGCTTGGCACTGGCAGTGGAGAT
GTCCTTGCACTTGATGTCGCCGCAGGGCAGTGGAAGTGGAGGGTCACTGATTGCCACCCT
GGGGGTGTCACAGCTGTAGCCTACTCGAAGCATGGGCGAAGTTTGTACACCGGAGGCACT
GATGGCATGGTCTGTAGGATCAATGCCTCAGATGGCTCTGTTGTAGAGAAATTTAAATCT
TCATCAAAAGCAATTTCTGCATTAGCTGTGTCACCAGATGGGGAGATTTTAGCAACAGCT
GCTGGCCAGTTGAGGACCTTTGATGCTTCTGATAACAAGAAGATTCAAAAATTCTCTGGC
CATCCAGTAGCTGTGAGGAGCATGGTTTTTAGTGGTGATAGCCAATATGTTCTGTCATCT
GGAGTTGGGGAACGCTATGTTGCCATTTGGAAGTTGGGTAGTGGTAAAACTCAGAGTTCA
AGCTGTATACTCTCTATGGAGCATCCAGCGATCTTTGTGGACTGTAAATGTTCAGACATT
AATGATACAGAAGGAGAAATACATGTGTTGGCTATTTCTGAGATTGGTGTCTGCTACTTT
TGGTCTGGGACTAATATGGATGACCTGCGTAATAAGAAGCCCACTAAAATTGCATTGTCT
GATTCCTCTCTTTCAAGATCTAAGCAAGGTTTTGCAATATTTGCCGCAAAACTGCAAGGA
ATAGATGGCCCTAATTCTGCACATGTTCTGCTGGCTTATGGATCTGTGGTGAAACCGTCT
TTTGACAAACTGTTGGTTCGTTATGGCATGGATATTAGTTTGGGTGTATCTGATGATGGA
GTTCTCTTACCCATGATTCAACCCACAAAGCCTCAGAAAGGCCAATCTGCTAAAAAGCAA
GGAATTATAACGGCTCTAGACCGTGCTAATGCAGAAGATGCAATCCTTCCTCTCCCACAG
CTCCATACGCAGGAAAAGAAAAGGAAACATAATGCAACAGAATCCAGTGGTGACATCCAG
TCTGCACCTCATAGTGACCTTAGTTCTACAAAATTGATTGAGAAAAGAGCTCCTATGCAA
AGAATTGAAGATGACAGTGTATGCATCGAAGACATGATGCGGAAGTGTGGAGTTATTGAT
TCTAGAGTTGATCAGGGCATGGAAGGTCATCCTAGCATACCCACTAGTATTTTATCTGAT
CTATTTGGCAGCAGCAGTAAAATCGATGCTAATTTACCCAACAAGAAGATTCGAGCACAT
CTAAGATCCTTGAAGCCTGGAGATGCTTGCGAACTTTTAGAAAAATTAGTATCTTCATGG
AAAACAAGATCTGGTAGTGCAGAGGTTGTTTTGCGGTGGATATACTGCTTATTAATTATC
CATGGTCGTTTTATCCCCTTTGAGAAATCTAAAAAAATAATTAGCGACCTTGAGAAGATG
TGTGGGGAAAGATACAAAGCAGCTGAAGATTTACTGAAGCTTTCTGGTCGTCTTCGATTG
CTCATGGCTCAGATCGTCAAGGATCCAAACGATGTTTCTGAGCTTCCATCAGAGGAGATG
CAGGATTCAGCGGCTGCTCAGTCTGATGAAGAGGAGGAAGATGATGAAATTGATGAAACG
GTGTATGGTGAAGACGCTGATTCGTCTCAAACAAGTGATGACGACGCTGAATAG

Peptide Sequence

PEP ID

Os03t0300300-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:10556232:10561713:1 gene:Os03g0300300 transcript:Os03t0300300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-68 description:WD40 repeat-like domain containing protein. (Os03t0300300-01)
Sequence

MAPAAATIRDLLTSFSPAADFLALSSGDGRIKVWDAVRGHLQTEFADIPPVEVGGGARAP
GAKRGHLALDYTCMKWVQLSSKKKRKAGSSLLVLGTGSGDVLALDVAAGQWKWRVTDCHP
GGVTAVAYSKHGRSLYTGGTDGMVCRINASDGSVVEKFKSSSKAISALAVSPDGEILATA
AGQLRTFDASDNKKIQKFSGHPVAVRSMVFSGDSQYVLSSGVGERYVAIWKLGSGKTQSS
SCILSMEHPAIFVDCKCSDINDTEGEIHVLAISEIGVCYFWSGTNMDDLRNKKPTKIALS
DSSLSRSKQGFAIFAAKLQGIDGPNSAHVLLAYGSVVKPSFDKLLVRYGMDISLGVSDDG
VLLPMIQPTKPQKGQSAKKQGIITALDRANAEDAILPLPQLHTQEKKRKHNATESSGDIQ
SAPHSDLSSTKLIEKRAPMQRIEDDSVCIEDMMRKCGVIDSRVDQGMEGHPSIPTSILSD
LFGSSSKIDANLPNKKIRAHLRSLKPGDACELLEKLVSSWKTRSGSAEVVLRWIYCLLII
HGRFIPFEKSKKIISDLEKMCGERYKAAEDLLKLSGRLRLLMAQIVKDPNDVSELPSEEM
QDSAAAQSDEEEEDDEIDETVYGEDADSSQTSDDDAE

Transcript Sequence

Transcript ID

Os03t0300300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10556232:10561713:1 gene:Os03g0300300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-68 description:WD40 repeat-like domain containing protein. (Os03t0300300-01)
Sequence

GAGCAAAACCTTTCGCCGCGCAGCCACCTAAACCCCTCTCCTCCCCCTTCCTCTCCCGCC
GCCGCCGCGCGCGCGAGCCGGCGGCCATGGCGCCCGCGGCCGCCACCATCCGCGACCTGC
TCACCTCCTTCAGCCCCGCCGCGGACTTCCTCGCCCTCTCCTCTGGCGACGGCCGCATCA
AGGTATGGGACGCCGTGCGCGGCCACCTTCAGACCGAGTTCGCTGATATCCCGCCGGTGG
AGGTGGGCGGCGGCGCGCGCGCCCCCGGGGCGAAGCGCGGTCACCTCGCACTGGACTACA
CCTGCATGAAGTGGGTACAGCTATCGAGCAAGAAGAAGCGGAAGGCAGGGAGTTCGCTGC
TGGTGCTTGGCACTGGCAGTGGAGATGTCCTTGCACTTGATGTCGCCGCAGGGCAGTGGA
AGTGGAGGGTCACTGATTGCCACCCTGGGGGTGTCACAGCTGTAGCCTACTCGAAGCATG
GGCGAAGTTTGTACACCGGAGGCACTGATGGCATGGTCTGTAGGATCAATGCCTCAGATG
GCTCTGTTGTAGAGAAATTTAAATCTTCATCAAAAGCAATTTCTGCATTAGCTGTGTCAC
CAGATGGGGAGATTTTAGCAACAGCTGCTGGCCAGTTGAGGACCTTTGATGCTTCTGATA
ACAAGAAGATTCAAAAATTCTCTGGCCATCCAGTAGCTGTGAGGAGCATGGTTTTTAGTG
GTGATAGCCAATATGTTCTGTCATCTGGAGTTGGGGAACGCTATGTTGCCATTTGGAAGT
TGGGTAGTGGTAAAACTCAGAGTTCAAGCTGTATACTCTCTATGGAGCATCCAGCGATCT
TTGTGGACTGTAAATGTTCAGACATTAATGATACAGAAGGAGAAATACATGTGTTGGCTA
TTTCTGAGATTGGTGTCTGCTACTTTTGGTCTGGGACTAATATGGATGACCTGCGTAATA
AGAAGCCCACTAAAATTGCATTGTCTGATTCCTCTCTTTCAAGATCTAAGCAAGGTTTTG
CAATATTTGCCGCAAAACTGCAAGGAATAGATGGCCCTAATTCTGCACATGTTCTGCTGG
CTTATGGATCTGTGGTGAAACCGTCTTTTGACAAACTGTTGGTTCGTTATGGCATGGATA
TTAGTTTGGGTGTATCTGATGATGGAGTTCTCTTACCCATGATTCAACCCACAAAGCCTC
AGAAAGGCCAATCTGCTAAAAAGCAAGGAATTATAACGGCTCTAGACCGTGCTAATGCAG
AAGATGCAATCCTTCCTCTCCCACAGCTCCATACGCAGGAAAAGAAAAGGAAACATAATG
CAACAGAATCCAGTGGTGACATCCAGTCTGCACCTCATAGTGACCTTAGTTCTACAAAAT
TGATTGAGAAAAGAGCTCCTATGCAAAGAATTGAAGATGACAGTGTATGCATCGAAGACA
TGATGCGGAAGTGTGGAGTTATTGATTCTAGAGTTGATCAGGGCATGGAAGGTCATCCTA
GCATACCCACTAGTATTTTATCTGATCTATTTGGCAGCAGCAGTAAAATCGATGCTAATT
TACCCAACAAGAAGATTCGAGCACATCTAAGATCCTTGAAGCCTGGAGATGCTTGCGAAC
TTTTAGAAAAATTAGTATCTTCATGGAAAACAAGATCTGGTAGTGCAGAGGTTGTTTTGC
GGTGGATATACTGCTTATTAATTATCCATGGTCGTTTTATCCCCTTTGAGAAATCTAAAA
AAATAATTAGCGACCTTGAGAAGATGTGTGGGGAAAGATACAAAGCAGCTGAAGATTTAC
TGAAGCTTTCTGGTCGTCTTCGATTGCTCATGGCTCAGATCGTCAAGGATCCAAACGATG
TTTCTGAGCTTCCATCAGAGGAGATGCAGGATTCAGCGGCTGCTCAGTCTGATGAAGAGG
AGGAAGATGATGAAATTGATGAAACGGTGTATGGTGAAGACGCTGATTCGTCTCAAACAA
GTGATGACGACGCTGAATAGAAACACTGAGACTAAGCGTAGCATTCTTATGATGTGTTGT
TTTATATTCAAACTTGATTACCCCGTAGTCAGGTTTGTATGACTAAGCAACCCCGAAGGG
TTGCGCAGAATTTTGACGAGGCGAAGCATCCTCTGAATT