Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0294100-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:10255888:10257612:1 gene:Os03g0294100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKIP interacting protein 32, SKIPa-interacting protein 32, SKIPa-interacting protein 32 description:Similar to pherophorin like protein. (Os03t0294100-00)
Sequence

GATGTAGTCGAGTTATACCGGTTATTGGTTAGAAGAGAAGGCAAAAATGATGCAAAGTCT
GGATCCATGGGAATTCCGGCAGCTACTAATAGCCGAGAGATGATCGGGGAGATAGAGAAC
AAATCAGCTTATGTGTTAGCTATTAAATCAGATGTAGAAAATCAGAGTGAATTCATTAAC
TTCCTGGCAGTGGAGGTAAAGAATGCGGCATACAAAGAAATAGCTGATGTTGAAGAGTTT
GTGAAGTGGCTTGATGGGGAACTATCTTACCTTGTGGACGAAAGAGCAGTGCTCAAGCAT
TTCCCAAACTGGCCAGAGAAGAAAGCAGATACCATGAGAGAAGCAGCATTCACCTACCGA
GATCTGAAGAATCTGGAATCAGAAGCATCGTCATTCCACGATGACAGGAGAGTTGCCACA
CCTATGGCTCTCAAGCGCATGCAAGCTCTGCAGGATAAAATTGAACAAGGTATTCATAAT
ACTGAGCGAGCAAGGGACAGTGCAAGTGGAAGATACAAGGATCTTAAGATCCCGTGGGAA
TGGATGCTTGACTCTGGAATCATAAGCCAACTAAAGATGGCTTCATTGAAGCTAGCAAGA
GAATTCATGAACCGCGTTGTGAATGCACTGAAGTCCGACCCATTCACAAATGACGAAGAA
CTGCTTCTCCAAGGTGTCCGCTTTGCCTTCCGCATACATCAGCTTGCAGGTGGGTTTGAT
GAAGGTTGCCGGAAAGCATTCCAAGAACTGAAGATGTATGCAAGCAAGTCAGATTGA

Peptide Sequence

PEP ID

Os03t0294100-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:10255888:10257612:1 gene:Os03g0294100 transcript:Os03t0294100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKIP interacting protein 32, SKIPa-interacting protein 32, SKIPa-interacting protein 32 description:Similar to pherophorin like protein. (Os03t0294100-00)
Sequence

DVVELYRLLVRREGKNDAKSGSMGIPAATNSREMIGEIENKSAYVLAIKSDVENQSEFIN
FLAVEVKNAAYKEIADVEEFVKWLDGELSYLVDERAVLKHFPNWPEKKADTMREAAFTYR
DLKNLESEASSFHDDRRVATPMALKRMQALQDKIEQGIHNTERARDSASGRYKDLKIPWE
WMLDSGIISQLKMASLKLAREFMNRVVNALKSDPFTNDEELLLQGVRFAFRIHQLAGGFD
EGCRKAFQELKMYASKSD

Transcript Sequence

Transcript ID

Os03t0294100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10255888:10257612:1 gene:Os03g0294100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKIP interacting protein 32, SKIPa-interacting protein 32, SKIPa-interacting protein 32 description:Similar to pherophorin like protein. (Os03t0294100-00)
Sequence

GATGTAGTCGAGTTATACCGGTTATTGGTTAGAAGAGAAGGCAAAAATGATGCAAAGTCT
GGATCCATGGGAATTCCGGCAGCTACTAATAGCCGAGAGATGATCGGGGAGATAGAGAAC
AAATCAGCTTATGTGTTAGCTATTAAATCAGATGTAGAAAATCAGAGTGAATTCATTAAC
TTCCTGGCAGTGGAGGTAAAGAATGCGGCATACAAAGAAATAGCTGATGTTGAAGAGTTT
GTGAAGTGGCTTGATGGGGAACTATCTTACCTTGTGGACGAAAGAGCAGTGCTCAAGCAT
TTCCCAAACTGGCCAGAGAAGAAAGCAGATACCATGAGAGAAGCAGCATTCACCTACCGA
GATCTGAAGAATCTGGAATCAGAAGCATCGTCATTCCACGATGACAGGAGAGTTGCCACA
CCTATGGCTCTCAAGCGCATGCAAGCTCTGCAGGATAAAATTGAACAAGGTATTCATAAT
ACTGAGCGAGCAAGGGACAGTGCAAGTGGAAGATACAAGGATCTTAAGATCCCGTGGGAA
TGGATGCTTGACTCTGGAATCATAAGCCAACTAAAGATGGCTTCATTGAAGCTAGCAAGA
GAATTCATGAACCGCGTTGTGAATGCACTGAAGTCCGACCCATTCACAAATGACGAAGAA
CTGCTTCTCCAAGGTGTCCGCTTTGCCTTCCGCATACATCAGCTTGCAGGTGGGTTTGAT
GAAGGTTGCCGGAAAGCATTCCAAGAACTGAAGATGTATGCAAGCAAGTCAGATTGATCT
GATGAGGATTGGAAAAAAGGCTCAAATACAATTATATAGGATTAAAATACATAATTAAAG
TTTTGCCGAGGTTGGCTCCAAGTCGACTCAGCTAGTCATCAG