Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0293500-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:10217810:10220738:-1 gene:Os03g0293500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRUVATE DECARBOXYLASE 2 description:Similar to Pyruvate decarboxylase isozyme 2. (Os03t0293500-01);Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC) (Fragment). (Os03t0293500-02)
Sequence	ATGGAGACCCATATCGGATCCGTGGACGGGGCGGCGGCGGCGGCGGACAACGGCGCGGTG GGGTGCCCGGCGTCGGCGGTGGGGTGCCCGATGACCTCGGCGCGCCCCGCGCCCGTGTCG GCCGGCGAGGCGTCGCTGGGACGGCACCTGGCGAGGCGGCTGGTGCAGGTGGGCGTCAGC GACGTGTTCGCCGTGCCCGGGGACTTCAACCTCACGCTGCTCGACCACCTGATCGCCGAG CCCGGGCTGCGCCTCGTCGGCTGCTGTAACGAGCTCAACGCCGGGTACGCGGCCGACGGC TACGCCCGCGCGCGCGGCGTCGGCGCCTGCGCCGTCACGTTCACCGTCGGCGGACTCAGC GTGCTCAACGCCATCGCCGGCGCGTACAGCGAGAACCTGCCGGTCATCTGCATCGCCGGA GGGCCGAACTCCAACGACTACGGCACCAACCGCATCCTCCACCACACCATCGGCCTCCCG GACTTCTCCCAGGAGCTCCGCTGCTTCCAGACCGTCACTTGCCACCAGGCGGTGGTGACC AATCTGGAGGATGCGCACGAGCAGATCGACACCGCCATCGCGACGGCGCTGCGGGAGAGC AAGCCTGTGTACCTCAGCATCAGCTGCAATCTCCCAGGGCTGCCTCACCCCACGTTTAGC CGCGACCCCGTCCCCTTCTTCCTCGCCCCCAGGTTGAGTAACAAGATGGGTCTGGAGGCT GCGGTGGAGGCCACTGTCGAGTTCCTGAACAAGGCGGTGAAGCCGGTGCTCGTTGGCGGC CCCAAGCTGCGTGTGGCAAAGGCAGGGAAGGCCTTCGTCGACCTTGTTGATGCCAGTGGC TACGCCTACGCGGTGATGCCGTCGGCCAAGGGGCTCGTGCCAGAGACGCACCCCCACTTC ATCGGCACCTACTGGGGTGCCGTCAGCACGGCCTTCTGTGCCGAGATCGTCGAGTCGGCC GACGCCTACCTCTTCGCAGGGCCAATCTTCAATGACTACAGCTCTGTCGGCTACTCCTTC CTCCTCAAGAAGGACAAGGCCATAATTGTGCAACCGGAGCGTGTCATCGTCGGGAATGGC CCGGCGTTTGGGTGCGTCATGATGAAGGAGTTCTTATCTGAGCTGGCTAAGCGCGTCAAC AAGAACACCACTGCTTATGAGAACTACAAGAGGATCTTCGTGCCTGAGGGCCAGCCGCTG GAGAGCGAGCCGAATGAGCCGCTGCGCGTTAATGTGCTCTTCAAGCACGTCCAGAAGATG CTGAACAGTGACAGTGCTGTGATTGCCGAGACTGGTGACTCCTGGTTCAATTGCCAGAAG CTGAAGCTCCCTGAGGGCTGCGGGTATGAATTCCAAATGCAGTATGGTTCCATTGGATGG TCAGTGGGTGCATTGCTCGGATATGCTCAGGGCGCTAAGGACAAGCGTGTGATTGCCTGT ATTGGTGATGGGAGTTTCCAGGTGACGGCACAGGATGTGTCAACAATGATTCGCTGTGCA CAGAACAGCATAATCTTCCTGATCAACAACGGCGGGTACACCATTGAGGTGGAGATCCAT GACGGTCCATACAACGTCATCAAGAACTGGAACTACACTGGCCTTGTGGATGCCATCCAC AATGGAGAGGGCAAATGCTGGACTTCTAAGGTGAAGTGCGAGGAGGAGCTGACGGAGGCG ATCGGGATGGCGCTGGGGGAGAAGGACTGCCTGTGCTTCATTGAGGTGATCGCGCACAAG GACGACACCAGCAAAGAGCTGCTGGAATGGGGATCGAGGGTTTCTGCTGCCAACTCCAGG CCACCAAATCCTCAGTAG

Peptide Sequence

PEP ID	Os03t0293500-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:10217810:10220738:-1 gene:Os03g0293500 transcript:Os03t0293500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRUVATE DECARBOXYLASE 2 description:Similar to Pyruvate decarboxylase isozyme 2. (Os03t0293500-01);Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC) (Fragment). (Os03t0293500-02)
Sequence	METHIGSVDGAAAAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVS DVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLS VLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVT NLEDAHEQIDTAIATALRESKPVYLSISCNLPGLPHPTFSRDPVPFFLAPRLSNKMGLEA AVEATVEFLNKAVKPVLVGGPKLRVAKAGKAFVDLVDASGYAYAVMPSAKGLVPETHPHF IGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSFLLKKDKAIIVQPERVIVGNG PAFGCVMMKEFLSELAKRVNKNTTAYENYKRIFVPEGQPLESEPNEPLRVNVLFKHVQKM LNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIAC IGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH NGEGKCWTSKVKCEEELTEAIGMALGEKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSR PPNPQ

Transcript Sequence

Transcript ID	Os03t0293500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:10217810:10220738:-1 gene:Os03g0293500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRUVATE DECARBOXYLASE 2 description:Similar to Pyruvate decarboxylase isozyme 2. (Os03t0293500-01);Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC) (Fragment). (Os03t0293500-02)
Sequence	ATCCACCGAACCATACCCAACAAGCGTCAAATCGCGTCAAAGCCAAAAACCTCATACAAG TCCAGGAATCTGTAATATATTCCGAGACTTTTACACGCATTCCAGTCATCACTAGTGTAG CGGTTGCTGCTTCTTCCCCGGGGAGGTTTATCGGATCTTGATGGAGACCCATATCGGATC CGTGGACGGGGCGGCGGCGGCGGCGGACAACGGCGCGGTGGGGTGCCCGGCGTCGGCGGT GGGGTGCCCGATGACCTCGGCGCGCCCCGCGCCCGTGTCGGCCGGCGAGGCGTCGCTGGG ACGGCACCTGGCGAGGCGGCTGGTGCAGGTGGGCGTCAGCGACGTGTTCGCCGTGCCCGG GGACTTCAACCTCACGCTGCTCGACCACCTGATCGCCGAGCCCGGGCTGCGCCTCGTCGG CTGCTGTAACGAGCTCAACGCCGGGTACGCGGCCGACGGCTACGCCCGCGCGCGCGGCGT CGGCGCCTGCGCCGTCACGTTCACCGTCGGCGGACTCAGCGTGCTCAACGCCATCGCCGG CGCGTACAGCGAGAACCTGCCGGTCATCTGCATCGCCGGAGGGCCGAACTCCAACGACTA CGGCACCAACCGCATCCTCCACCACACCATCGGCCTCCCGGACTTCTCCCAGGAGCTCCG CTGCTTCCAGACCGTCACTTGCCACCAGGCGGTGGTGACCAATCTGGAGGATGCGCACGA GCAGATCGACACCGCCATCGCGACGGCGCTGCGGGAGAGCAAGCCTGTGTACCTCAGCAT CAGCTGCAATCTCCCAGGGCTGCCTCACCCCACGTTTAGCCGCGACCCCGTCCCCTTCTT CCTCGCCCCCAGGTTGAGTAACAAGATGGGTCTGGAGGCTGCGGTGGAGGCCACTGTCGA GTTCCTGAACAAGGCGGTGAAGCCGGTGCTCGTTGGCGGCCCCAAGCTGCGTGTGGCAAA GGCAGGGAAGGCCTTCGTCGACCTTGTTGATGCCAGTGGCTACGCCTACGCGGTGATGCC GTCGGCCAAGGGGCTCGTGCCAGAGACGCACCCCCACTTCATCGGCACCTACTGGGGTGC CGTCAGCACGGCCTTCTGTGCCGAGATCGTCGAGTCGGCCGACGCCTACCTCTTCGCAGG GCCAATCTTCAATGACTACAGCTCTGTCGGCTACTCCTTCCTCCTCAAGAAGGACAAGGC CATAATTGTGCAACCGGAGCGTGTCATCGTCGGGAATGGCCCGGCGTTTGGGTGCGTCAT GATGAAGGAGTTCTTATCTGAGCTGGCTAAGCGCGTCAACAAGAACACCACTGCTTATGA GAACTACAAGAGGATCTTCGTGCCTGAGGGCCAGCCGCTGGAGAGCGAGCCGAATGAGCC GCTGCGCGTTAATGTGCTCTTCAAGCACGTCCAGAAGATGCTGAACAGTGACAGTGCTGT GATTGCCGAGACTGGTGACTCCTGGTTCAATTGCCAGAAGCTGAAGCTCCCTGAGGGCTG CGGGTATGAATTCCAAATGCAGTATGGTTCCATTGGATGGTCAGTGGGTGCATTGCTCGG ATATGCTCAGGGCGCTAAGGACAAGCGTGTGATTGCCTGTATTGGTGATGGGAGTTTCCA GGTGACGGCACAGGATGTGTCAACAATGATTCGCTGTGCACAGAACAGCATAATCTTCCT GATCAACAACGGCGGGTACACCATTGAGGTGGAGATCCATGACGGTCCATACAACGTCAT CAAGAACTGGAACTACACTGGCCTTGTGGATGCCATCCACAATGGAGAGGGCAAATGCTG GACTTCTAAGGTGAAGTGCGAGGAGGAGCTGACGGAGGCGATCGGGATGGCGCTGGGGGA GAAGGACTGCCTGTGCTTCATTGAGGTGATCGCGCACAAGGACGACACCAGCAAAGAGCT GCTGGAATGGGGATCGAGGGTTTCTGCTGCCAACTCCAGGCCACCAAATCCTCAGTAGAA ACTTTTAGTACTTGTTGCAAGCTGGGCTCAATCATAATAATGTAAACACTTTGCCCTTCA GTTATGTTCCTTGTGTCCATTCCCTCGGGTTTCTGTTCTTCCAGTTTCGGTAGCTCTGTA TCTACTTGTGAACATCTGTTTCTCCAATCAAATGCTACGAGGGTTATGAGAGGTTTTC