Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0293400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:10214020:10215765:1 gene:Os03g0293400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to basic helix-loop-helix family protein. (Os03t0293400-01)
Sequence

ATAACTCAGCTGCAATCAAAAGGAGGCCTTCGATGCAATGTGATTGCCAATGCTGCCAAC
TGGAGGTTAAAACCTGGAGGTGGAGGGGTTAATGCAGCAATATACAATGCCGCTGGGGAA
GATTTACAACGTGCAACCAAAGAATGCGCGGACACATTGAGACCTGGGAGCTCTGTTGCT
GTCCCACTTCCATCAACTTCTCCTCTGCATCAAAGGGAAGGTGTGACCCATATCATACAT
GTGCTTGGGCCAAACATGAACCCAATGCGACCGGATTGTCTGAAGAATGACTATACAAAA
GGTTCTAAGATTCTCCATGAGGCATATACATCACTTTTTGAGAACTTTGTAGCCATTGTC
CAGAGCTGCATGGGGAAGCAGAACACCGAGCCTGCTTTAGAAAAGCCAGCAACTGCAGTG
ACATCACCTAATGATTCAAAAACGAAGCGAGAGTGCAACCATGATTCTGAGAGGACCAAA
AAACACAAGTTGGTTCAACCCAATACATCCTCAAATCAGGCTAGAGAGGGAGATAGCAAG
AGGAGTGGTGTTACCACTACTAAGACTTGGGGATCCTGGGCCCAAGCTCTTTATGAGCTT
GCGATGCACCCAGAAAATTACAAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTC
GTTGTTCTGAACGACCTCTATCCCAAGGCCAAAAGGCATGTTTTGGTTGTATCTAGGAAG
GATGGTCTTGATTCTCTAGCAGATGTCAAGAAAGAACACTTACCTTTGCTGAGGAGAATG
CATTCTGCTGGAGTGAAATGGGCACAGAAGTTCCTAGAGGAAGATTCATCTTTGGTATTC
AGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAG
GACTTCAACTCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTT
TTCCTTGATTCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGATCAGCAACTATCAGC
AGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCA
AATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTT
CTGCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAG

Peptide Sequence

PEP ID

Os03t0293400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:10214020:10215765:1 gene:Os03g0293400 transcript:Os03t0293400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to basic helix-loop-helix family protein. (Os03t0293400-01)
Sequence

ITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAGEDLQRATKECADTLRPGSSVA
VPLPSTSPLHQREGVTHIIHVLGPNMNPMRPDCLKNDYTKGSKILHEAYTSLFENFVAIV
QSCMGKQNTEPALEKPATAVTSPNDSKTKRECNHDSERTKKHKLVQPNTSSNQAREGDSK
RSGVTTTKTWGSWAQALYELAMHPENYKNSDSLLEISDDFVVLNDLYPKAKRHVLVVSRK
DGLDSLADVKKEHLPLLRRMHSAGVKWAQKFLEEDSSLVFRLGYHSVPSMRQLHLHIISQ
DFNSASLKNKKHWNSFTTTFFLDSVDVIEEIDQRGSATISSDDRVLAMELRCHRCRSAHP
NIPKLKSHIASCKSSFPSHLLQKDRLLSSSTMHMDCT

Transcript Sequence

Transcript ID

Os03t0293400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:10214020:10215765:1 gene:Os03g0293400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to basic helix-loop-helix family protein. (Os03t0293400-01)
Sequence

ATAACTCAGCTGCAATCAAAAGGAGGCCTTCGATGCAATGTGATTGCCAATGCTGCCAAC
TGGAGGTTAAAACCTGGAGGTGGAGGGGTTAATGCAGCAATATACAATGCCGCTGGGGAA
GATTTACAACGTGCAACCAAAGAATGCGCGGACACATTGAGACCTGGGAGCTCTGTTGCT
GTCCCACTTCCATCAACTTCTCCTCTGCATCAAAGGGAAGGTGTGACCCATATCATACAT
GTGCTTGGGCCAAACATGAACCCAATGCGACCGGATTGTCTGAAGAATGACTATACAAAA
GGTTCTAAGATTCTCCATGAGGCATATACATCACTTTTTGAGAACTTTGTAGCCATTGTC
CAGAGCTGCATGGGGAAGCAGAACACCGAGCCTGCTTTAGAAAAGCCAGCAACTGCAGTG
ACATCACCTAATGATTCAAAAACGAAGCGAGAGTGCAACCATGATTCTGAGAGGACCAAA
AAACACAAGTTGGTTCAACCCAATACATCCTCAAATCAGGCTAGAGAGGGAGATAGCAAG
AGGAGTGGTGTTACCACTACTAAGACTTGGGGATCCTGGGCCCAAGCTCTTTATGAGCTT
GCGATGCACCCAGAAAATTACAAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTC
GTTGTTCTGAACGACCTCTATCCCAAGGCCAAAAGGCATGTTTTGGTTGTATCTAGGAAG
GATGGTCTTGATTCTCTAGCAGATGTCAAGAAAGAACACTTACCTTTGCTGAGGAGAATG
CATTCTGCTGGAGTGAAATGGGCACAGAAGTTCCTAGAGGAAGATTCATCTTTGGTATTC
AGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAG
GACTTCAACTCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTT
TTCCTTGATTCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGATCAGCAACTATCAGC
AGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCA
AATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTT
CTGCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCT
GCGACCAATGGTCCTTCCAAGCACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATT
AGGAAGGAATCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGAATCCTGCCTTGTGAACAA
ACTGCAGTGCATCTGATCGTTAAAAAGAAAAACAGAGATCTGAAGTGTTGCAAGCCCTTT
CTTAC