Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0290500-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:10090151:10097850:-1 gene:Os03g0290500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os03t0290500-01)
Sequence	ATGGCGACGGATGCCGCCGACGAGGCGCCGCTGCTCGCCGAGGAGCCCCTCCGCCCCGGC GCCTGCAGCCGCGAGCTCGAGCTGCGGGAGTTCCGCGACCGCTACGTGATCCGCTCGGTC GACGGCGGCGGCGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCA GAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGCTGGCGTG ATCAGGTTGCTCGCCGGAAGCTATGTACTTGTCATCACTTCTCAAAGGGACGCTGGTTCA TATCAGGGATCCCCTGTTTACAATGTGAACTCGATGAAATTCTTATGCTGCAACGAGGCT ATAAAGCATTTAACTGCACAAGAAAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAA ATCGCAGAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAACTTG CAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGGCTGAC CCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAAGCAAAACTTGATGAA TTTATCATCCCACTGGTCCAAGGAAGTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCA CCTGTCAGAATAACGTTGTTCTCACGTAGATGCAACAGGCGTCTAGGAACAAGAATGTGG AGGAGAGGTGCAAATCTTGAAGGAGCCACAGCTAATTTTGTTGAGACAGAACAGCTGGCA GAGTATGAAGGTTTGATGTCTTCATTTATACAGGTTCGAGGCTCCATTCCACTTCTCTGG GAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACG CCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTT GTTGATTTGACAGATAAGCAAGGAGATGAAGGAAATTTAAGCAATGCATTTGCTGCTGAA ATGGAGAGGATTCCTAACATCAGGTATGTGCATTTTGATTTCCATCATATCTGTCGTGGA GGGAACTTTGATAATCTGCAAGTTCTATACAATCAAATTGAAGAAGCTATTCAGAAACAA GGATATTTTCTTATCAACTCCAAAGGAGAGATATTCCTGGAGCAAAGCGGCATAGTTAGA TCCAATTGCATAGATTGTCTGGACCGTACAAATGTAACTCAGAGCTTCCTTGCTAGAAAA TCGTTGGACTTACAGCTGCAGCGCATGGGGGCTCTATCATCATCTGGCAGCATTTCCCAA TCTGGAGACATTAGTGACACCTTTAAAAAAATGTGGGTTGAACATGGAGATGAGCTAAGC CTGGAATATGCTGGTTCTTATGCACTAAAGGGGGACCTAGTGAGGTATGGAAGGCAGACA TTACCTGGATTGATTAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTT CATGACGGAGTGAGACAAGATGCTCTAGACCTTATCAGCGGTTACTATACAGTCAGCAAA GGCATCTCTTCTCCTTTTCAAAATGGTGGATTTGAATCTGCAACGTATCTTCCTGTGGCT TCAGCAATCATAGTTGGTGGGATTACTGCCACCACATTCACTCTTAGTCAAGTTGGACGG AATGCACAACACTTCATCACCTCCATTATCTGTGCGGGTTTGACGGCTGGAGTGGTAGCC TTGGTGAAAGCAAATGGGAAGCAGTTTTGCTCTAAGCCTCGTTTGTGTGGTCTCATATAA

Peptide Sequence

PEP ID	Os03t0290500-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:10090151:10097850:-1 gene:Os03g0290500 transcript:Os03t0290500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os03t0290500-01)
Sequence	MATDAADEAPLLAEEPLRPGACSRELELREFRDRYVIRSVDGGGAFAVSRSNGSLRPLSA EEAAAGSDCRVSKIYGVAGVIRLLAGSYVLVITSQRDAGSYQGSPVYNVNSMKFLCCNEA IKHLTAQEKRDEAYFMSLLKIAETTHGLYYSYDRDLTLNLQRASKLPAGRVHKPLWKQAD PRFVWNKNLLEEFIEAKLDEFIIPLVQGSFQTAQFSLKEAPVRITLFSRRCNRRLGTRMW RRGANLEGATANFVETEQLAEYEGLMSSFIQVRGSIPLLWEQIVDLSYKPCLNIIEHEET PKVVQRHFHDLSQRYGDTVVVDLTDKQGDEGNLSNAFAAEMERIPNIRYVHFDFHHICRG GNFDNLQVLYNQIEEAIQKQGYFLINSKGEIFLEQSGIVRSNCIDCLDRTNVTQSFLARK SLDLQLQRMGALSSSGSISQSGDISDTFKKMWVEHGDELSLEYAGSYALKGDLVRYGRQT LPGLIKDGMSALSRYYLNNFHDGVRQDALDLISGYYTVSKGISSPFQNGGFESATYLPVA SAIIVGGITATTFTLSQVGRNAQHFITSIICAGLTAGVVALVKANGKQFCSKPRLCGLI

Transcript Sequence

Transcript ID	Os03t0290500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:10090151:10097850:-1 gene:Os03g0290500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptojanin, N-terminal domain containing protein. (Os03t0290500-01)
Sequence	TTTCTCGTTCCCCTTTTCCTTCTCCCGTCACGGATCCGGGGGGCCGGGCCACCGATCCAA ACGTAAACCGAGCGCGCACACACACACGCCACGCGCCTCGCCGCCGATGGCGACGGATGC CGCCGACGAGGCGCCGCTGCTCGCCGAGGAGCCCCTCCGCCCCGGCGCCTGCAGCCGCGA GCTCGAGCTGCGGGAGTTCCGCGACCGCTACGTGATCCGCTCGGTCGACGGCGGCGGCGC CTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGAGGAAGCGGCTGC GGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGCTGGCGTGATCAGGTTGCTCGC CGGAAGCTATGTACTTGTCATCACTTCTCAAAGGGACGCTGGTTCATATCAGGGATCCCC TGTTTACAATGTGAACTCGATGAAATTCTTATGCTGCAACGAGGCTATAAAGCATTTAAC TGCACAAGAAAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTAC TCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAACTTGCAGAGGGCATCAAA GTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGGCTGACCCACGTTTCGTTTG GAACAAAAATTTGCTAGAGGAGTTTATTGAAGCAAAACTTGATGAATTTATCATCCCACT GGTCCAAGGAAGTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCACCTGTCAGAATAAC GTTGTTCTCACGTAGATGCAACAGGCGTCTAGGAACAAGAATGTGGAGGAGAGGTGCAAA TCTTGAAGGAGCCACAGCTAATTTTGTTGAGACAGAACAGCTGGCAGAGTATGAAGGTTT GATGTCTTCATTTATACAGGTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGA TTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACGCCGAAGGTTGTCCA ACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGA TAAGCAAGGAGATGAAGGAAATTTAAGCAATGCATTTGCTGCTGAAATGGAGAGGATTCC TAACATCAGGTATGTGCATTTTGATTTCCATCATATCTGTCGTGGAGGGAACTTTGATAA TCTGCAAGTTCTATACAATCAAATTGAAGAAGCTATTCAGAAACAAGGATATTTTCTTAT CAACTCCAAAGGAGAGATATTCCTGGAGCAAAGCGGCATAGTTAGATCCAATTGCATAGA TTGTCTGGACCGTACAAATGTAACTCAGAGCTTCCTTGCTAGAAAATCGTTGGACTTACA GCTGCAGCGCATGGGGGCTCTATCATCATCTGGCAGCATTTCCCAATCTGGAGACATTAG TGACACCTTTAAAAAAATGTGGGTTGAACATGGAGATGAGCTAAGCCTGGAATATGCTGG TTCTTATGCACTAAAGGGGGACCTAGTGAGGTATGGAAGGCAGACATTACCTGGATTGAT TAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTTCATGACGGAGTGAG ACAAGATGCTCTAGACCTTATCAGCGGTTACTATACAGTCAGCAAAGGCATCTCTTCTCC TTTTCAAAATGGTGGATTTGAATCTGCAACGTATCTTCCTGTGGCTTCAGCAATCATAGT TGGTGGGATTACTGCCACCACATTCACTCTTAGTCAAGTTGGACGGAATGCACAACACTT CATCACCTCCATTATCTGTGCGGGTTTGACGGCTGGAGTGGTAGCCTTGGTGAAAGCAAA TGGGAAGCAGTTTTGCTCTAAGCCTCGTTTGTGTGGTCTCATATAATTCTTTGTTTATAC CAATGACACTAACATGAACCACCCCCACCCCTAAATTTGTAATCCTTCTCAGAACTCAAC GGAAAAAAGAACCTCAGCAAGTAGTACATCTATAAGAGCCAACTTGCCCTGTAGACTAAC ACCTCAAATTAAGCAGCCCCAAGTTCCTTTTTTTTTTCAGTACACATTCTCAGTAGATCT TGTGATGAGCCATGGATACATGGTTGGTAATCATTCTCAATAGGTAATGAACGGCAGTTG GCCTTCTGATCCTGTAAACTGAAGTTAATCTGTAACGCCAGATTTCTTCCTATTAGTAAT TGACTGCTTGGATGATAGTATGCAAAACTGCAAATGTATGTTCTAAATGAGTAGCTTACA CGACCCAGAGTTCAG