Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0280800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:9600671:9603553:-1 gene:Os03g0280800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-xylose synthase 1, UDP-glucuronic acid decarboxylase 1 description:Similar to UDP-D-glucuronate decarboxylase. (Os03t0280800-01)
Sequence

ATGAAGCAGCTCAACCGCCAGCCTACCCTCAGCAAGCAGCACCGCCCGCACCACCACCGC
CTCCCCCTCCCCCGCTCCCTCGCCTCCTACCTCCTCCGCGAGCACCGCCTCCTCTTCGTC
CTCCTCGGCTTCCTCCTCGCCTCCTCCTGCTTCCTCATCTACCCCTCCTTCACCCCTCTC
TCCTCCTCCTCCTCACCCCGCGACACCGTCGCCGCCAGAATCCGTCGTGGCGGCGGCGGC
GGCGGTGGCGCGTCGTCCGTCGTCGTCTCCGCCGCCGCCGCCGCCTCGCGCCGCCTCCCC
GTCGGCGTCCGCAAGCCACCCCTCCGCGTCGTCGTCACGGGGGGAGCGGGCTTCGTCGGC
AGCCACCTCGTCGACGAGCTGCTTGCCCGCGGGGACAGCGTCATCGTCGTCGACAACTTC
TTCACGGGGCGCAAGGAGAACGTCGCGCGCCACCTCGCCGACCCGCGGTTCGAGCTCATC
CGCCACGACGTCGTCGAGCCCATCCTCCTCGAGGTCGACCAGATCTACCACCTCGCCTGC
CCGGCATCCCCCGTCCACTACAAATTCAACCCCATCAAGACCATCAAGACAAATGTGATG
GGGACCTTGAACATGCTGGGATTGGCAAAGAGGGTGGGAGCCCGGTTCTTATTGACCAGT
ACCAGTGAGGTGTACGGTGATCCTCTTGAACATCCACAGAAGGAGAGCTACTGGGGCCAT
GTAAATCCCATAGGCGTTAGGAGTTGTTACGACGAGGGCAAGAGAACAGCTGAGACTCTG
ACCATGGATTACCATCGAGGTGCCGGTGTTGAGGTGAGAATTGCGCGAATATTCAACACA
TATGGCCCTCGTATGTGTTTAGATGATGGGCGAGTTGTTAGCAACTTCGTCGCTCAGACA
TTGCGGAAACAGCCAATGACAGTTTATGGTGATGGAAAGCAGACTAGAAGTTTTCAATAT
GTTTCAGATTTGGTTGATGGATTGATAACCCTGATGGAAAGTGAGCATATAGGACCTTTC
AACTTGGGAAATCCTGGAGAATTTACCATGTTAGAGCTTGCTCAGGTAGTGAAAGAGACA
ATTGACCCAAGTGCTCGTGTTGAGTTCAAACCCAATACTGCAGATGATCCACACATGAGA
AAACCAGACATCTCGAAGGCCAAATCTCTTCTCCATTGGGAGCCAAAAATCTCACTGAAG
CAAGGCCTGCCACGTATGGTTTCAGACTTCCAGAAGCGCATCATGGATGAGAAAAGATAA

Peptide Sequence

PEP ID

Os03t0280800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:9600671:9603553:-1 gene:Os03g0280800 transcript:Os03t0280800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-xylose synthase 1, UDP-glucuronic acid decarboxylase 1 description:Similar to UDP-D-glucuronate decarboxylase. (Os03t0280800-01)
Sequence

MKQLNRQPTLSKQHRPHHHRLPLPRSLASYLLREHRLLFVLLGFLLASSCFLIYPSFTPL
SSSSSPRDTVAARIRRGGGGGGGASSVVVSAAAAASRRLPVGVRKPPLRVVVTGGAGFVG
SHLVDELLARGDSVIVVDNFFTGRKENVARHLADPRFELIRHDVVEPILLEVDQIYHLAC
PASPVHYKFNPIKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKESYWGH
VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQT
LRKQPMTVYGDGKQTRSFQYVSDLVDGLITLMESEHIGPFNLGNPGEFTMLELAQVVKET
IDPSARVEFKPNTADDPHMRKPDISKAKSLLHWEPKISLKQGLPRMVSDFQKRIMDEKR

Transcript Sequence

Transcript ID

Os03t0280800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:9600671:9603553:-1 gene:Os03g0280800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-xylose synthase 1, UDP-glucuronic acid decarboxylase 1 description:Similar to UDP-D-glucuronate decarboxylase. (Os03t0280800-01)
Sequence

ACAGTCTCACTCCCCCTCGCCACCGCTCCTCCTCCGCCTCCGACTCCGGCGACCGCGCCC
CGCCGCCGCCGCCAACGACAATGAAGCAGCTCAACCGCCAGCCTACCCTCAGCAAGCAGC
ACCGCCCGCACCACCACCGCCTCCCCCTCCCCCGCTCCCTCGCCTCCTACCTCCTCCGCG
AGCACCGCCTCCTCTTCGTCCTCCTCGGCTTCCTCCTCGCCTCCTCCTGCTTCCTCATCT
ACCCCTCCTTCACCCCTCTCTCCTCCTCCTCCTCACCCCGCGACACCGTCGCCGCCAGAA
TCCGTCGTGGCGGCGGCGGCGGCGGTGGCGCGTCGTCCGTCGTCGTCTCCGCCGCCGCCG
CCGCCTCGCGCCGCCTCCCCGTCGGCGTCCGCAAGCCACCCCTCCGCGTCGTCGTCACGG
GGGGAGCGGGCTTCGTCGGCAGCCACCTCGTCGACGAGCTGCTTGCCCGCGGGGACAGCG
TCATCGTCGTCGACAACTTCTTCACGGGGCGCAAGGAGAACGTCGCGCGCCACCTCGCCG
ACCCGCGGTTCGAGCTCATCCGCCACGACGTCGTCGAGCCCATCCTCCTCGAGGTCGACC
AGATCTACCACCTCGCCTGCCCGGCATCCCCCGTCCACTACAAATTCAACCCCATCAAGA
CCATCAAGACAAATGTGATGGGGACCTTGAACATGCTGGGATTGGCAAAGAGGGTGGGAG
CCCGGTTCTTATTGACCAGTACCAGTGAGGTGTACGGTGATCCTCTTGAACATCCACAGA
AGGAGAGCTACTGGGGCCATGTAAATCCCATAGGCGTTAGGAGTTGTTACGACGAGGGCA
AGAGAACAGCTGAGACTCTGACCATGGATTACCATCGAGGTGCCGGTGTTGAGGTGAGAA
TTGCGCGAATATTCAACACATATGGCCCTCGTATGTGTTTAGATGATGGGCGAGTTGTTA
GCAACTTCGTCGCTCAGACATTGCGGAAACAGCCAATGACAGTTTATGGTGATGGAAAGC
AGACTAGAAGTTTTCAATATGTTTCAGATTTGGTTGATGGATTGATAACCCTGATGGAAA
GTGAGCATATAGGACCTTTCAACTTGGGAAATCCTGGAGAATTTACCATGTTAGAGCTTG
CTCAGGTAGTGAAAGAGACAATTGACCCAAGTGCTCGTGTTGAGTTCAAACCCAATACTG
CAGATGATCCACACATGAGAAAACCAGACATCTCGAAGGCCAAATCTCTTCTCCATTGGG
AGCCAAAAATCTCACTGAAGCAAGGCCTGCCACGTATGGTTTCAGACTTCCAGAAGCGCA
TCATGGATGAGAAAAGATAAACAAGAAGAAACGAATGAACTCACACCTGTACTATACTCC
CCGGATCATTTCCAGTACCTTGACAAGCTTAGCTGCAGAAGTACAACAGAGAAATTGCCC
AAAGTTTCTTCTTCGAGGCAATCCTTTTTGTGACAGGAAATCTCTTGTTTGGTTTTGACT
TCTTTGATACATATGTTTTGTCACAGAATTTTGTCATCGAAAGCTTAGCCTTTCAGACAA
CAGTACTACTAGAATTTTACATAAACATAGAGACTTTTCATGG