Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0278500-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:9461167:9465395:1 gene:Os03g0278500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0278500-01)
Sequence	ATGGCCGCGCAGGAGATGGAGGTTATGATGGTTGCGATGGCGGCGGAGGCGCCGGTGGCT GTGGAGGTGGAGGCGGTTCCGGCGGTGGCGGGGGGGCTAAACGCGACGGTGCCCGCGTTG TACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCACCTGCTCGAGGTGTTCGGCAAG ATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAATGCCACGAGCAACTCCCTCAGA TATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGCAATTGCTTTGGAGAAACTAAAT CATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTGGTCTAACCGAGATCCAGATGCT AGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCTTAATGATTTAGTTGACAATGTA AGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATTATCTTGTAAAGTCGCTAAAAAT GAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATTTGCGTTGCAAGAATCAGCAGAT GCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGGCAGGCAATTGCATGTTGCTACA TTTATTAAGAAGAGTGAACGATCTACAAACAATGATGACAAATATACTAACCTATACATG AAGAACCTTGATGATGATATAACAGAGGAACTTATTAAGTTAAAGTTCTCTCAGTATGGT TTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGGGACATCTAAGGGCTTTGGGTTT GTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAAAGAATCCATGAACGGGATGCTA CTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAAGAAAGCTGAAAGGAAACAATAT TTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAATCACCAAGAGCAATGGGTCGAAT GTCTATATAAAAAATATTAATGATGAAGTTGGCGACGATGCTCTCCGTGAACGGTTCAAT GAATTTGGAAACATTACATCAGCAAAGATTATGCGTGATGAAAAGGGTATTAGCAAAGGA TTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAAATGTGCTGTAAGCAACATGCGT GGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTATTGCTCAAAGGAAAGAGGAAAGA CGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAACGATGGTTGGAGCTACAAGTCCT GTCATACCCACAGGATATCCTCAATTTTACTTTGCCCACCCTAGTACACATCTCCCTCAA AGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGGGATTAGTCAAGAATGGAGGCAT AACATGTTTCCCTCGTCACATAATATCCAACAAATACATTCACCGATTATGCGAAATACT CCACGGCAATACAGAAACAACAGGGGAAGGATGAATGGAAATATGATGCATTTTCACCAC ACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGAATTCATGTCCATGTCCCGACAG CGATTTAGCCATGCTAAGTATATTCCAAATGACATCATGGCCAATGGATTGGCTATTCAT CATGGTGACTCTATTTCATCGATGAATGACGCTTTTAACAACCTGCTAGCTACTGCTCCA CCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATATCCGTTGGTTGAGAGACATCAT CCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGAGCTAGGTAATTCTGAAGTGGTC ATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAATAGAGGAGTGTGTCAAACTGCTC CAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCTGCACCCTGGTTTCCTCCTAGAC TCTGCTGGTGTAAACGCCAACTAA

Peptide Sequence

PEP ID	Os03t0278500-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:9461167:9465395:1 gene:Os03g0278500 transcript:Os03t0278500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0278500-01)
Sequence	MAAQEMEVMMVAMAAEAPVAVEVEAVPAVAGGLNATVPALYVGDLHESVREEHLLEVFGK IGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDA RRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESAD ASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYG LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY LQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP VIPTGYPQFYFAHPSTHLPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNT PRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQRFSHAKYIPNDIMANGLAIH HGDSISSMNDAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVV MLLYSSNMLSAKIEECVKLLQEVKPKPEDQEALHPGFLLDSAGVNAN

Transcript Sequence

Transcript ID	Os03t0278500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:9461167:9465395:1 gene:Os03g0278500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0278500-01)
Sequence	CCTCGCCTGCAGTGTCTCGTGTCCCAGAACGCGATTGCGTTTTTTTTTTGCACGTTTGGT TTCCATATCCCTCGTCTCTTGTACTCCCTTACCCACATTTGGCCTAGCCGGAGGCGGTAG CCAGGGCCCAGGGCTGCTTCTTATGGCCGCGCAGGAGATGGAGGTTATGATGGTTGCGAT GGCGGCGGAGGCGCCGGTGGCTGTGGAGGTGGAGGCGGTTCCGGCGGTGGCGGGGGGGCT AAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCA CCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAA TGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGC AATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTG GTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCT TAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATT ATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATT TGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGG CAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATGA CAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTAA GTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGG GACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAA AGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAA GAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAAT CACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACGA TGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTGA TGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAA ATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTAT TGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAAC GATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCCA CCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGG GATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATACA TTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATGG AAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGA ATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCAT GGCCAATGGATTGGCTATTCATCATGGTGACTCTATTTCATCGATGAATGACGCTTTTAA CAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATA TCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGA GCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAAT AGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCT GCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAA TCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGA TAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTTAC TAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTAC GAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTT