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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0271600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:9084480:9085918:1 gene:Os03g0271600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0271600-01)
Sequence

ATGGCGTCTTCTCCGGTGTCGTACTGGTGCTACCACTGCAGCCGCTTCGTGAGGGTGTCG
CCGTCCACGGTCGTCTGCCCGGAGTGCGACGGCGGCTTCCTGGAGCAGTTCCCGCAGCCG
CCGCCGCGCGGCGGCGGCGGGAGCGGCCGGCGCGGGGCGATGAACCCGGTGATCGTGCTC
CGGGGAGGGTCCCTGTCCGGGTTCGAGCTCTACTACGACGACGGCTCCGGCGACGGGCTG
CGGCCGCTGCCCGGCGACGTGTCGCACCTCCTCATGGGGTCGGGCTTCCACCGCCTGCTC
GACCAGTTCTCCCGGCTCGAGGCGGCGGCGCCGCGGCCGCCGGCGTCGAAGGCGGCGGTG
GAGTCGATGCCGTCGGTGACGGTTGCCGGGAGCGGGGCGCACTGCGCGGTGTGCCAGGAG
GCGTTCGAGCCGGGCGCCTCCGCGCGGGAGATGCCGTGCAAGCACGTCTACCACCAGGAC
TGCATCCTGCCCTGGCTCTCCCTCCGCAACTCATGCCCCGTCTGCCGCCGCGAGCTACCG
GCGGCCGCGGCCCCCGAGTCGGAGGCAGATGCGGGACTAACCATCTGGCGACTCCCACGC
GGTGGATTCGCCGTCGGGAGGTTCGCCGGTGGGCCAAGGGAGCAGCTTCCGGTTGTCTAC
ACTGAACTGGATGGGGGCTTCAGTAACGGCGTCGGGCCGAGGCGGGTAACGTGGCCGGAG
GGCGACGGCCATGTCGATGGCGGCGAAGGTCGGATTCGCCGTGTATTTAGGAATCTGTTT
GGTTGTTTTGGTCGGAGCAGTCGGCCGGAGAGTTCATCATCGCAGTCCCGTAGTGGCTGA

Peptide Sequence

PEP ID

Os03t0271600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:9084480:9085918:1 gene:Os03g0271600 transcript:Os03t0271600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0271600-01)
Sequence

MASSPVSYWCYHCSRFVRVSPSTVVCPECDGGFLEQFPQPPPRGGGGSGRRGAMNPVIVL
RGGSLSGFELYYDDGSGDGLRPLPGDVSHLLMGSGFHRLLDQFSRLEAAAPRPPASKAAV
ESMPSVTVAGSGAHCAVCQEAFEPGASAREMPCKHVYHQDCILPWLSLRNSCPVCRRELP
AAAAPESEADAGLTIWRLPRGGFAVGRFAGGPREQLPVVYTELDGGFSNGVGPRRVTWPE
GDGHVDGGEGRIRRVFRNLFGCFGRSSRPESSSSQSRSG

Transcript Sequence

Transcript ID

Os03t0271600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:9084480:9085918:1 gene:Os03g0271600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0271600-01)
Sequence

GCAATTCCCCTCCTCCGCCTCCCCTAGTTTCCTCTCCTCCCCGAAACCCCCAATTCGAAT
CCGGCGGCGAATTCGATTGGGGATTTCGGCGTCCTCGCCTCCGTGGGATTCCTCGGATCC
CGCCTCGGCTTCCCGTCTCGATCTGCGTCTGGAGTTTTGGAGCAGACGATTTGAGTTTCT
GGTTCGATTTGGTTTGGTTTGGTTTGGGGGCGATTTGGTTCAAGGCGCGGATGGCGTCTT
CTCCGGTGTCGTACTGGTGCTACCACTGCAGCCGCTTCGTGAGGGTGTCGCCGTCCACGG
TCGTCTGCCCGGAGTGCGACGGCGGCTTCCTGGAGCAGTTCCCGCAGCCGCCGCCGCGCG
GCGGCGGCGGGAGCGGCCGGCGCGGGGCGATGAACCCGGTGATCGTGCTCCGGGGAGGGT
CCCTGTCCGGGTTCGAGCTCTACTACGACGACGGCTCCGGCGACGGGCTGCGGCCGCTGC
CCGGCGACGTGTCGCACCTCCTCATGGGGTCGGGCTTCCACCGCCTGCTCGACCAGTTCT
CCCGGCTCGAGGCGGCGGCGCCGCGGCCGCCGGCGTCGAAGGCGGCGGTGGAGTCGATGC
CGTCGGTGACGGTTGCCGGGAGCGGGGCGCACTGCGCGGTGTGCCAGGAGGCGTTCGAGC
CGGGCGCCTCCGCGCGGGAGATGCCGTGCAAGCACGTCTACCACCAGGACTGCATCCTGC
CCTGGCTCTCCCTCCGCAACTCATGCCCCGTCTGCCGCCGCGAGCTACCGGCGGCCGCGG
CCCCCGAGTCGGAGGCAGATGCGGGACTAACCATCTGGCGACTCCCACGCGGTGGATTCG
CCGTCGGGAGGTTCGCCGGTGGGCCAAGGGAGCAGCTTCCGGTTGTCTACACTGAACTGG
ATGGGGGCTTCAGTAACGGCGTCGGGCCGAGGCGGGTAACGTGGCCGGAGGGCGACGGCC
ATGTCGATGGCGGCGAAGGTCGGATTCGCCGTGTATTTAGGAATCTGTTTGGTTGTTTTG
GTCGGAGCAGTCGGCCGGAGAGTTCATCATCGCAGTCCCGTAGTGGCTGAACGCAGTTTT
CTCGGTAACTCGATCTCCTATTGATAGTGGTGAATAAGTAGGATTTAGTATAAGAAGGGA
ACCCAGATTATAAGTTCTTGGGACTTTTGATGTAAATGAAAACCTTGCGATTTTTTTCCA
CTTTGTCCCGTTTTAAGAGTTTATTTAGAGATGGCCACGAGCAAAATAGCAAACAACTGG
AAATTAGTTTGGAAAGCAAATTAGGAGGAAGAAGCACAGGACTTCATGAAAGGAATGACA
GTGAATTTATTGGGTAAATCAATTGTTGCAATGTTGTAGTCAGAGAGAACAAAGTGTTGT
TCTTACCTCTGTACTGTTTGTGTATATACTGGATTGGGCCAAGAAGATTTCTGATTTGC