Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0271100-03
CDS Infomation	cds chromosome:IRGSP-1.0:3:9065039:9068046:1 gene:Os03g0271100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2B description:Similar to Sigma factor SIG2B. (Os03t0271100-01);Similar to Sigma factor SIG2B. (Os03t0271100-02);Similar to Sigma factor SIG2B. (Os03t0271100-03)
Sequence	ATGGCGTGCCTCGCGCCGCAGCTCAAGTGGCCCCTTTCCACCCGCGCGGCGGCGTTCCGG GAGCACGGCGGCGCCGGAATCGGCGGGTTCCGTACCGTTAGGCTCCACTGCGCGGTGTCC ACCACCGCGCTGGTAGAGGCCGAGAGCTCGGATTCCTTGGCCCCCGGGGCGAGGCGTCTC GTCGTCTACGACGGAGCCGTCGCGCCGCCGCCTCTTCCGGGAGGTTTCGGTGAGGCGATT CTCAACCAAGAAGCCGTGGTGGCGGCCGCAGCGGCGGAGGCCGTCGCTCTAGCAAGGGCA GCGGCGGAGGTCGCCGGAGAGGTCGTCCGGATGTCGCAAACCGAGCAACGGCACCGGCCT GACTTCGTCACGACGCACGACACGGAGGACAACTACTTGGCCAGAGAGATCCTCCGCGCC GAGGCGGGATTGGGGGCGAGGTACGCCGATGCCTGTCTGTCGGAGGATGCGGGGTTCTCC AGTATCTTCAGCGATGAATCCGAGGTAGATGACGATGAGCAGTGCGTCCAGGGCGTGGCT GTGAAATCGGTGCGCCAGTCCGAGAGGAGAGCTCGGAGGGTGAGGGCGGCGATGAAGGCG GCCAAATCGTTCAGCGGCCGGAATCCCGTCGCGGCGTCGTCGTCGGCGAGGAAGAAGAGG TTGAAGGGTTGCCGGAGTCCTCTCGGCTGCTTCTACAAGATGACCGGCCGGAGGCTTCTG ACAGCAAAACAAGAAGTTGAGTTCTCACAAGGCATTCAGGATCTCCTGAAGTTGGAAGCT ATCCAAAAGGAGCTTGCTCACTACAACGGCGGTGAACCAACCTTCTCACAGTGGGCAGAA GCAGCTGGAACTGACGAGAACACTTTGCGAAAACGTCTGAACTATGGAATTTCCTGCAAG AACACGATGGTAAAGTCTAACGTGAGACTTGTAATCTCAATTGCTAGAGAGTTTGAAGGT CCTGGAATGGAATTTTCTGATCTTATTCAGGAAGGAATACAGGGCCTTGTACGAGGCGCT GAAAAGTTTGATGCTTCAAAGGGTTTTCGATTCTCTACATACTCTCACTGGTGGATCAAA CAAGCAATACGCAAATCCGTTTTAGAACAAACCCAGATTATTCGCTTGCCGGCACACATG GCCGAAGCAAGTTCCCGGGTGAAGGAATGCCGACGGCGGCTCCGCCGGCAGCTGAAGAGG CTACCCACCAACGAAGAGATCGCATCCGACACCGGCATGCCGCTCAGGCGCGTCGAGGCG GCGATGAGCCTCCCAAAATACACCGTTTCCCTCACCAGCAAGGTCGGGTGCACTGACATG ACATACCAGGAGATCACGCCGGACACGAGCACGGAGACGGCGGAGGAGATGCTGCACCGG TGGCTGATGAAGGAAGACGTGGACAGGGCGCTGGACGGGCTGAGCCCGCGGGAGAGGCAG GTGATCAGGTACAGGTTCGGGATGGACGACGGCCGGCTGCGGACGCTGCACGACATCGGT CGGCTGATGGGGGTGAGCAGGGAGAGGATCCGGCAGATCGAGCTGGTCGCGTTCCGGAAG CTCAGGGGCAGGAAGAAGGTTCAGTCGCTGCAGCATTATCTGCAGCCTGTGGAGAGCTGG TAG

Peptide Sequence

PEP ID	Os03t0271100-03
PEP Infomation	pep chromosome:IRGSP-1.0:3:9065039:9068046:1 gene:Os03g0271100 transcript:Os03t0271100-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2B description:Similar to Sigma factor SIG2B. (Os03t0271100-01);Similar to Sigma factor SIG2B. (Os03t0271100-02);Similar to Sigma factor SIG2B. (Os03t0271100-03)
Sequence	MACLAPQLKWPLSTRAAAFREHGGAGIGGFRTVRLHCAVSTTALVEAESSDSLAPGARRL VVYDGAVAPPPLPGGFGEAILNQEAVVAAAAAEAVALARAAAEVAGEVVRMSQTEQRHRP DFVTTHDTEDNYLAREILRAEAGLGARYADACLSEDAGFSSIFSDESEVDDDEQCVQGVA VKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKGCRSPLGCFYKMTGRRLL TAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCK NTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIK QAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEA AMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQ VIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQPVESW

Transcript Sequence

Transcript ID	Os03t0271100-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:9065039:9068046:1 gene:Os03g0271100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SIGMA FACTOR 2B description:Similar to Sigma factor SIG2B. (Os03t0271100-01);Similar to Sigma factor SIG2B. (Os03t0271100-02);Similar to Sigma factor SIG2B. (Os03t0271100-03)
Sequence	AGGTAGATACACGTCGCGCGTTCGAGCCTAAGGTACCTGCTCTCTCGCGCGCGCCACCGA TGGCGTGCCTCGCGCCGCAGCTCAAGTGGCCCCTTTCCACCCGCGCGGCGGCGTTCCGGG AGCACGGCGGCGCCGGAATCGGCGGGTTCCGTACCGTTAGGCTCCACTGCGCGGTGTCCA CCACCGCGCTGGTAGAGGCCGAGAGCTCGGATTCCTTGGCCCCCGGGGCGAGGCGTCTCG TCGTCTACGACGGAGCCGTCGCGCCGCCGCCTCTTCCGGGAGGTTTCGGTGAGGCGATTC TCAACCAAGAAGCCGTGGTGGCGGCCGCAGCGGCGGAGGCCGTCGCTCTAGCAAGGGCAG CGGCGGAGGTCGCCGGAGAGGTCGTCCGGATGTCGCAAACCGAGCAACGGCACCGGCCTG ACTTCGTCACGACGCACGACACGGAGGACAACTACTTGGCCAGAGAGATCCTCCGCGCCG AGGCGGGATTGGGGGCGAGGTACGCCGATGCCTGTCTGTCGGAGGATGCGGGGTTCTCCA GTATCTTCAGCGATGAATCCGAGGTAGATGACGATGAGCAGTGCGTCCAGGGCGTGGCTG TGAAATCGGTGCGCCAGTCCGAGAGGAGAGCTCGGAGGGTGAGGGCGGCGATGAAGGCGG CCAAATCGTTCAGCGGCCGGAATCCCGTCGCGGCGTCGTCGTCGGCGAGGAAGAAGAGGT TGAAGGGTTGCCGGAGTCCTCTCGGCTGCTTCTACAAGATGACCGGCCGGAGGCTTCTGA CAGCAAAACAAGAAGTTGAGTTCTCACAAGGCATTCAGGATCTCCTGAAGTTGGAAGCTA TCCAAAAGGAGCTTGCTCACTACAACGGCGGTGAACCAACCTTCTCACAGTGGGCAGAAG CAGCTGGAACTGACGAGAACACTTTGCGAAAACGTCTGAACTATGGAATTTCCTGCAAGA ACACGATGGTAAAGTCTAACGTGAGACTTGTAATCTCAATTGCTAGAGAGTTTGAAGGTC CTGGAATGGAATTTTCTGATCTTATTCAGGAAGGAATACAGGGCCTTGTACGAGGCGCTG AAAAGTTTGATGCTTCAAAGGGTTTTCGATTCTCTACATACTCTCACTGGTGGATCAAAC AAGCAATACGCAAATCCGTTTTAGAACAAACCCAGATTATTCGCTTGCCGGCACACATGG CCGAAGCAAGTTCCCGGGTGAAGGAATGCCGACGGCGGCTCCGCCGGCAGCTGAAGAGGC TACCCACCAACGAAGAGATCGCATCCGACACCGGCATGCCGCTCAGGCGCGTCGAGGCGG CGATGAGCCTCCCAAAATACACCGTTTCCCTCACCAGCAAGGTCGGGTGCACTGACATGA CATACCAGGAGATCACGCCGGACACGAGCACGGAGACGGCGGAGGAGATGCTGCACCGGT GGCTGATGAAGGAAGACGTGGACAGGGCGCTGGACGGGCTGAGCCCGCGGGAGAGGCAGG TGATCAGGTACAGGTTCGGGATGGACGACGGCCGGCTGCGGACGCTGCACGACATCGGTC GGCTGATGGGGGTGAGCAGGGAGAGGATCCGGCAGATCGAGCTGGTCGCGTTCCGGAAGC TCAGGGGCAGGAAGAAGGTTCAGTCGCTGCAGCATTATCTGCAGCCTGTGGAGAGCTGGT AGCTAGCCATGCATGCGTGTGCTGCCTAGTTACCACTTACCACCACATTGCCATCTTCTT TTTGGAAGGGTTATTAACCTGTACGAGTAACTGTTAATCCTTACGTATGAGTATGTAACA CACGTGTAAAGAAAGGAGATCCAAACATTTGTTTTGTAACAACATACTGGTATAGCTATT GCCGGAAGCAAAGAACGCAACATAGTTGCTTCAAGAG