Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0262100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:8568445:8571825:1 gene:Os03g0262100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 9_2 description:Exon junction complex, Pym domain containing protein. (Os03t0262100-01)
Sequence

ATGGCCACAGCCAGCGACGGCAGCGGCAGCGGCGGCGAGCAGCGGCGCCTCCTCTCCATC
CCCAAGGAGGGCGAGCGCATCATCGCGCCGACGCGCCGCCCCGACGGCACGCTCCGCAAG
GCCATCCGCATCCGCGCCGGCTACGTCCCCCAGGAGGAGGTCGCCATCTACCAGTCCAAG
GGCGCCCAGATGAGGAAGTCGGGGCCCGACGTGCCGCCGGGCTACGACCCGGCGCTCGAT
GCTAAGCCCAAGACGAAGGCGGCCAAGCGGAACGAGCGGCGTAAGGAGAAACGGCAGCAG
CAGGCCAGTACAACAAATGATAAAGGAAAGGGCTTGCATATAGAGGATGATGCAGGAGAA
ACTGACAATCCGAAGGATGCAGTGGACAGTGTAACAAAGCAGATAAGTGGCATTGCTATT
TCTGAATCTCTGGTTGTCGCAACCTCCTCCACTGATGCTACCGACAACTCAAAATCGGAG
TCATCTGCTCCAGACATAGATAAGAAAATTCGAGCACTGAAGAAGAAGATACGCTTAGCA
GAAGCGCAAGTGCAAGGAGATCCAGAAAATTTGAAGCCTGAACAACTCGAGAAAATGAAG
AAGATAGAAGGTTGGAAAGAGGAGCTGAAGCTTTTGGAGAATAAGAGCTCTCCTGCTGCT
TCCTAG

Peptide Sequence

PEP ID

Os03t0262100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:8568445:8571825:1 gene:Os03g0262100 transcript:Os03t0262100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 9_2 description:Exon junction complex, Pym domain containing protein. (Os03t0262100-01)
Sequence

MATASDGSGSGGEQRRLLSIPKEGERIIAPTRRPDGTLRKAIRIRAGYVPQEEVAIYQSK
GAQMRKSGPDVPPGYDPALDAKPKTKAAKRNERRKEKRQQQASTTNDKGKGLHIEDDAGE
TDNPKDAVDSVTKQISGIAISESLVVATSSTDATDNSKSESSAPDIDKKIRALKKKIRLA
EAQVQGDPENLKPEQLEKMKKIEGWKEELKLLENKSSPAAS

Transcript Sequence

Transcript ID

Os03t0262100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:8568445:8571825:1 gene:Os03g0262100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 9_2 description:Exon junction complex, Pym domain containing protein. (Os03t0262100-01)
Sequence

ACCCGACCCGACCCAACTCTGGTCTTAACTCCGACGCCCGAACTCCTAAACCCACCCCGT
GCCCCCGCCGTCGTCGCCGCCGCCGCCGCAGCAGCAGCCTTCCTCCAAATCCGCGCGCCT
CCTCCGGCCATGGCCACAGCCAGCGACGGCAGCGGCAGCGGCGGCGAGCAGCGGCGCCTC
CTCTCCATCCCCAAGGAGGGCGAGCGCATCATCGCGCCGACGCGCCGCCCCGACGGCACG
CTCCGCAAGGCCATCCGCATCCGCGCCGGCTACGTCCCCCAGGAGGAGGTCGCCATCTAC
CAGTCCAAGGGCGCCCAGATGAGGAAGTCGGGGCCCGACGTGCCGCCGGGCTACGACCCG
GCGCTCGATGCTAAGCCCAAGACGAAGGCGGCCAAGCGGAACGAGCGGCGTAAGGAGAAA
CGGCAGCAGCAGGCCAGTACAACAAATGATAAAGGAAAGGGCTTGCATATAGAGGATGAT
GCAGGAGAAACTGACAATCCGAAGGATGCAGTGGACAGTGTAACAAAGCAGATAAGTGGC
ATTGCTATTTCTGAATCTCTGGTTGTCGCAACCTCCTCCACTGATGCTACCGACAACTCA
AAATCGGAGTCATCTGCTCCAGACATAGATAAGAAAATTCGAGCACTGAAGAAGAAGATA
CGCTTAGCAGAAGCGCAAGTGCAAGGAGATCCAGAAAATTTGAAGCCTGAACAACTCGAG
AAAATGAAGAAGATAGAAGGTTGGAAAGAGGAGCTGAAGCTTTTGGAGAATAAGAGCTCT
CCTGCTGCTTCCTAGACAATGTCGACCTCAGCACTGATGTTGAGTAGAGCCATCATATAT
CGAATGCCTGCCTGCTGTGATGTTTTGCTGATCCAAAGTCCAATCAGTCATTGTCTTGCT
TGTCTTATTCCCCTCGGCCTCTGGAAAAAGCAATCCAATTGATGTGGGGTTTCACACAGA
GTGGTAGCTTTTTGCCACAAATTGTTGTCTCGTGTACGTCCTCCAGTTCGAAGATTCGTA
TTGCAAAATCTGTTTGTCGTAGACATCGTGCAATGAGACAACCGATTGGAGTTGGGGTAT
GTGACGGTGCCATTGTAGCTTTGTATATTATGCCAACATTGGCAATTCCTCTTGACACTG
GATTTACTTCTCTGCTGATCCAGTAATAACCGTACAAATTTAAAGGCCACAGGCCTCATT
GCATC