Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0259300-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:8398817:8405867:1 gene:Os03g0259300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:a homologue of yeast Hrd3/mammalian SEL1L description:Homologue of yeast Hrd3/mammalian SEL1L, ER-resident type I membrane protein, Polyubiquitination of unfolded proteins, Quality control of endoplasmic reticulum-derived protein bodies in rice endosperm (Os03t0259300-01);Non-protein coding transcript. (Os03t0259300-02)
Sequence	ATGCAGAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCAC CGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGC GCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACC GCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTC GACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTC GACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTC GTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCC ACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCT CTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTG CTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCC TTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCT GCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACAC AGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGAT TTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGG CTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGG TTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTAT GCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCA GCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTAT GGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCAT AAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAG AGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAA GCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAA ATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGA TGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGA ATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTAT GGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTC CGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTA ATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAG GCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATG CATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAG GCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGG ATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTA TATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAACAATA TTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAA GCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAA

Peptide Sequence

PEP ID	Os03t0259300-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:8398817:8405867:1 gene:Os03g0259300 transcript:Os03t0259300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:a homologue of yeast Hrd3/mammalian SEL1L description:Homologue of yeast Hrd3/mammalian SEL1L, ER-resident type I membrane protein, Polyubiquitination of unfolded proteins, Quality control of endoplasmic reticulum-derived protein bodies in rice endosperm (Os03t0259300-01);Non-protein coding transcript. (Os03t0259300-02)
Sequence	MQNRRRSRPVVPTPMARVRHRHLLLLVAAVAAAASALLPCASAVRPFVLVLSRDDFLKDT AGAHPSLPSADADSDEWDDFDDESPATDPLLSPSSWVPLLDPASASPSGDEPDSPSDALF VAGVRAMLSAASAGDDAAFATAAAQIEAAATGGHPGAQSALAFLSGAGMTRPASRSRAFL LHKFAADAGDLQSKMALAYSFFRQEMYEEAVTLYAELAEAALTSSLISKEPPVIEPVRLH SGTEENKEALRKSRGEDDEDFQITEYQAQRGNTVAMHKLGLLYYYGLRGVRRDYGKAYHW FSKAVEKGDTRAMELLGEIYARGAGVERNYTEAYKWLTLAAKQQQYSAYNGLGYLYVKGY GVEKKNLTKAKEFFEIAAEHKEHGGYYNLGVLYLKGIGVKRDVMTACNFFLRAVNAGQPK AIYQVAKLFQKGVGLKRNLQMAAVMYKSVAERGPWSSLSRWALESYLKGDIGKALLLYSR MADLGYEVAQSNAAWILDRYGDESICMGESGFCTDMERHLRAHALWWQASEQGNEHAALL IGDAYYYGRGVGRDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQ AVEVDPAAKLPVMLALTSLWIRKNYDGSFLVHFIDSLPEVYPVVEEWVEDVLMDEGNATI FTLFACLVTVLYLRERQRRQAAAANPQQPDGAPI

Transcript Sequence

Transcript ID	Os03t0259300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:8398817:8405867:1 gene:Os03g0259300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:a homologue of yeast Hrd3/mammalian SEL1L description:Homologue of yeast Hrd3/mammalian SEL1L, ER-resident type I membrane protein, Polyubiquitination of unfolded proteins, Quality control of endoplasmic reticulum-derived protein bodies in rice endosperm (Os03t0259300-01);Non-protein coding transcript. (Os03t0259300-02)
Sequence	GTCGATGCAGAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCG CCACCGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCC GTGCGCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGA CACCGCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGA CTTCGACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCT CCTCGACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCT CTTCGTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTT CGCCACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTC CGCTCTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTT CCTGCTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTA CTCCTTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGA GGCTGCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTT ACACAGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGA AGATTTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATT AGGGCTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCA TTGGTTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGAT CTATGCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACT TGCAGCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGG TTATGGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGA GCATAAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGT AAAGAGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACC AAAAGCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCT CCAAATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTC TAGATGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTC TAGAATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAG GTATGGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACA TCTCCGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTT GTTAATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGC CGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTA TATGCATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGA TCAGGCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTT ATGGATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGA GGTATATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAAC AATATTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCG TCAAGCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTT GCATCATGATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTC AGCCATATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGT CCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAG GTTAAAAATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGAC TAGGATAAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAG TAGTGCTTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATA TAAGGGATTTTATTTT