Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0254900-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:8182277:8186633:-1 gene:Os03g0254900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0254900-01);Similar to zinc finger (C3HC4-type RING finger) family protein. (Os03t0254900-02)
Sequence

GCTTGTGGGTCTCCTCAACCATATTCGATTCGTGAGGGAGGGGATCGAGCTCTGTTGCGG
TGTTGTAGATCATTATCACTCTTGGTTTGTGATTCTCGGAAGTCGGAAGTGTTCTTCGCA
AGCTCGATTTTCTTTTTTTTGCGATATTTTTTTGTATCGTTAAATCTCGAATCCCGACGA
GGGGGTTCCCCTGGTCACCGCCGACGAGGCTCCGCCGCCCAGGGCCACGGCCACCATCAG
GTCCACGGCCACCACCACCAGCCGTCCTCGCCTCCCCCGCCTCCGCCGCCGGAGTCGTCC
CCGAGCCACTACGTGTTCGCCGCCGCCACGCCGTACCCTCCGCCGCAGTACACCAACCCC
AACCTGCCGCGGTACTACCCTCAGTACGGGAACTACTACCCGCCGCCGCCGTCCCTGCAG
GTGCCCCTCCCGGCGCCGTACGACCACCACCACAGGGGCGGCGGCGCGGGGGTGCCCGCC
GGAGGGGAGTTCCCGCCGTCGGCGCACCCGCAACACTACCCGGGGTGGCCTGGGGTCTCT
GGGCGGCCGCACCCCTGCGGATTGCAGCCGGCCATGCCGACGCCGTACGTCGAGCACCAG
AAGGCTATCACAATCCGCAACGACGTCAACCTCAAGAAGGAGACTCTTCGGATTGAGCCT
GATGAGGAGTGCCCGGGCCGCTTCCTCGTCGCCTTCACCTTTGACGCCACCCTTGCTGGA
AGCATGACTGTTTACTTCTTTGCAAAAGAAGAGCTCAACTGCAATCTAACGGCGGTGAAA
GAAGACCTGATTAAGCCTGTTACTGTAAGCTTCAAAGAGGGTCTTGGTCAGAAGTTCAGA
CAGCCTTCTGGCACTGGAATCAACTTCTCCGTGTTTGAGGATTCCGAGTTATTGAAGCAG
GGGGACATGGATGTATATCCACTTGCAGTTAAAGCTGAAACAACCATGCCTGTTGATCAA
AAGTTGGAAGGAGAAGATCAAAAGATGAAAACTCCAAACTCACAGATCACACAGGCTCTG
TTTGAAAAGAAAGAAAGCGGTGATTATCAAGTTCGAGTTGCTAGCCAGATCCTTTGGGTC
AATGGAACTAGGTATGAGTTGCAGGAAATATATGGAATAGGAAACTCGGTGGAAGGCGAT
GCTGATGCCAATGATCCTGGGAAAGAATGTGTTATTTGCCTCTCGGAGCCAAGGGATACT
ACCGTTCTCCCATGTAGGCATATGTGTATGTGCAGCGAGTGTGCCAAGGTCCTGAGGTAC
CAGACGACCCGGTGCCCGATCTGCCGACAGCCCGTTGAGCGGCTACTTGAGATCAAAGTC
AACAACAAAGCTGAAGAGCAGCAGCAGCCGTCACCCGATTCACCGATCAAAGTCAACAGC
AAAGCCGAAGAGCATCAGCAGCAGCCATCCCAATCGCTGCCAATCCCACACAGGGAAGAG
GTGTAG

Peptide Sequence

PEP ID

Os03t0254900-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:8182277:8186633:-1 gene:Os03g0254900 transcript:Os03t0254900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0254900-01);Similar to zinc finger (C3HC4-type RING finger) family protein. (Os03t0254900-02)
Sequence

ACGSPQPYSIREGGDRALLRCCRSLSLLVCDSRKSEVFFASSIFFFLRYFFVSLNLESRR
GGSPGHRRRGSAAQGHGHHQVHGHHHQPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNP
NLPRYYPQYGNYYPPPPSLQVPLPAPYDHHHRGGGAGVPAGGEFPPSAHPQHYPGWPGVS
GRPHPCGLQPAMPTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAG
SMTVYFFAKEELNCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQ
GDMDVYPLAVKAETTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWV
NGTRYELQEIYGIGNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRY
QTTRCPICRQPVERLLEIKVNNKAEEQQQPSPDSPIKVNSKAEEHQQQPSQSLPIPHREE
V

Transcript Sequence

Transcript ID

Os03t0254900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:8182277:8186633:-1 gene:Os03g0254900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0254900-01);Similar to zinc finger (C3HC4-type RING finger) family protein. (Os03t0254900-02)
Sequence

GCCGATCGAATCATTTGAGCTTGTGGGTCTCCTCAACCATATTCGATTCGTGAGGGAGGG
GATCGAGCTCTGTTGCGGTGTTGTAGATCATTATCACTCTTGGTTTGTGATTCTCGGAAG
TCGGAAGTGTTCTTCGCAAGCTCGATTTTCTTTTTTTTGCGATATTTTTTTGTATCGTTA
AATCTCGAATCCCGACGAGGGGGTTCCCCTGGTCACCGCCGACGAGGCTCCGCCGCCCAG
GGCCACGGCCACCATCAGGTCCACGGCCACCACCACCAGCCGTCCTCGCCTCCCCCGCCT
CCGCCGCCGGAGTCGTCCCCGAGCCACTACGTGTTCGCCGCCGCCACGCCGTACCCTCCG
CCGCAGTACACCAACCCCAACCTGCCGCGGTACTACCCTCAGTACGGGAACTACTACCCG
CCGCCGCCGTCCCTGCAGGTGCCCCTCCCGGCGCCGTACGACCACCACCACAGGGGCGGC
GGCGCGGGGGTGCCCGCCGGAGGGGAGTTCCCGCCGTCGGCGCACCCGCAACACTACCCG
GGGTGGCCTGGGGTCTCTGGGCGGCCGCACCCCTGCGGATTGCAGCCGGCCATGCCGACG
CCGTACGTCGAGCACCAGAAGGCTATCACAATCCGCAACGACGTCAACCTCAAGAAGGAG
ACTCTTCGGATTGAGCCTGATGAGGAGTGCCCGGGCCGCTTCCTCGTCGCCTTCACCTTT
GACGCCACCCTTGCTGGAAGCATGACTGTTTACTTCTTTGCAAAAGAAGAGCTCAACTGC
AATCTAACGGCGGTGAAAGAAGACCTGATTAAGCCTGTTACTGTAAGCTTCAAAGAGGGT
CTTGGTCAGAAGTTCAGACAGCCTTCTGGCACTGGAATCAACTTCTCCGTGTTTGAGGAT
TCCGAGTTATTGAAGCAGGGGGACATGGATGTATATCCACTTGCAGTTAAAGCTGAAACA
ACCATGCCTGTTGATCAAAAGTTGGAAGGAGAAGATCAAAAGATGAAAACTCCAAACTCA
CAGATCACACAGGCTCTGTTTGAAAAGAAAGAAAGCGGTGATTATCAAGTTCGAGTTGCT
AGCCAGATCCTTTGGGTCAATGGAACTAGGTATGAGTTGCAGGAAATATATGGAATAGGA
AACTCGGTGGAAGGCGATGCTGATGCCAATGATCCTGGGAAAGAATGTGTTATTTGCCTC
TCGGAGCCAAGGGATACTACCGTTCTCCCATGTAGGCATATGTGTATGTGCAGCGAGTGT
GCCAAGGTCCTGAGGTACCAGACGACCCGGTGCCCGATCTGCCGACAGCCCGTTGAGCGG
CTACTTGAGATCAAAGTCAACAACAAAGCTGAAGAGCAGCAGCAGCCGTCACCCGATTCA
CCGATCAAAGTCAACAGCAAAGCCGAAGAGCATCAGCAGCAGCCATCCCAATCGCTGCCA
ATCCCACACAGGGAAGAGGTGTAGCTGCGACAATGTCGGGCGCATATGATCATGATATAT
GATCCTAGATTGTGGCCTTCCGACCTTCCCCGTATCGCGCTCTGCGCTCTCGCCTTGAGC
ATGGGGAGGAGATGTAACAGATGTGTACCTTCCAGTGTATGTTAGCATGTAAGCTTCTGG
CATAATGTGGCTTCCTGACCTGACCTGTGTGGGTGAAGGTCTTAGATGCCAAGAGGAGTG
GAGTGGGTGTACCATATACACATCACATGGATTCATGCGTGTACTATTGCCCTAACCTGA
AGAAGTGGAGAACATCTCATACTTAATGGGATTTCCCTCCATCAGGAGTAAAAAGAGTTA
CAGCAGATGGACTCCAGATTTGTACAAAATTTCCTCATGATTCTCATTATATTTTTGCCT
TGATG