Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0254800-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:8177756:8181722:-1 gene:Os03g0254800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chorismate synthase description:Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1). (Os03t0254800-01)
Sequence	ATGGCCGCGCCAACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGC GGGTTCCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGC CGCGCCGCTCGCCTAGAGGTGAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTT GCAACTTATGGAGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCCACCC AGAATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGACGGCCAGGCCAG AGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACAT GAAGGAATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGG GGTGATTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGAC TTCAAATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATT GGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTAT GACACTGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATAT GCACAGAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGTGGT GTGGTCACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAA CTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATC GGCAGTGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATG GATGAGGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATA TCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAG AAACAACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCAC GACCCATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTC ATGGACCAGCTGATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCTCTA CAAGAACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAA

Peptide Sequence

PEP ID	Os03t0254800-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:8177756:8181722:-1 gene:Os03g0254800 transcript:Os03t0254800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chorismate synthase description:Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1). (Os03t0254800-01)
Sequence	MAAPTSSQPVARVLPRGGGGGFRAFPESAPASLRFSVGRRRAARLEVKASANVFGNYFQV ATYGESHGGGVGCVISGCPPRIPLTEADMQVELDRRRPGQSRITTPRKETDTCKILSGTH EGMTTGTPIHVFVPNTDQRGGDYSEMAKAYRPSHADATYDFKYGVRAVQGGGRSSARETI GRVAAGALAKKILKLKSGVEILAFVSKVHQVVLPEDAVDYDTVTMEQIESNIVRCPDPEY AQKMIDAIDKVRVRGDSIGGVVTCIARNVPRGIGSPVFDKLEAELAKAMLSLPASKGFEI GSGFAGTDYTGSEHNDEFYMDEAGNVRTRTNRSGGVQGGISNGEIIYFKVAFKPTATIGK KQHTVSREHEDVELLARGRHDPCVVPRAVPMVESMAALVLMDQLMAHIAQCEMFPLNLAL QEPVGSASSVPAFAPDLS

Transcript Sequence

Transcript ID	Os03t0254800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:8177756:8181722:-1 gene:Os03g0254800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chorismate synthase description:Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1). (Os03t0254800-01)
Sequence	CTCGCGTCCTCGCCTCGCTTCGGCTCTCACCAACCAAACCAACAACCTCGCTCCGATGGC CGCGCCAACGTCGTCGCAGCCGGTGGCGCGCGTCCTCCCCCGCGGCGGCGGCGGCGGGTT CCGCGCCTTCCCGGAGTCCGCCCCGGCTTCCCTCCGCTTCTCCGTCGGCCGCCGCCGCGC CGCTCGCCTAGAGGTGAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAAC TTATGGAGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCCACCCAGAAT CCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGACGGCCAGGCCAGAGCAG AATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAGG AATGACCACTGGGACACCAATTCATGTTTTTGTCCCGAACACAGATCAGAGAGGGGGTGA TTACAGTGAAATGGCTAAGGCCTACAGACCTTCACATGCAGATGCAACTTATGACTTCAA ATACGGTGTTAGAGCAGTGCAGGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAG GGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGATCTT GGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACAC TGTAACAATGGAACAGATAGAAAGCAACATTGTTAGATGTCCTGATCCAGAATATGCACA GAAGATGATTGATGCAATCGATAAAGTACGAGTTAGAGGTGATTCGATTGGTGGTGTGGT CACATGCATTGCAAGAAATGTTCCTCGTGGGATTGGCTCTCCTGTATTTGACAAACTTGA GGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAG TGGATTTGCAGGTACTGACTACACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGA GGCTGGAAATGTGAGAACAAGAACTAATCGTTCAGGCGGTGTGCAGGGAGGGATATCAAA TGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGGAAGAAACA ACATACTGTTTCAAGGGAGCATGAGGATGTTGAACTTTTAGCAAGGGGCCGCCACGACCC ATGTGTTGTCCCTCGCGCTGTGCCGATGGTGGAGTCCATGGCCGCATTAGTCCTCATGGA CCAGCTGATGGCGCACATTGCTCAATGTGAGATGTTTCCACTGAACCTTGCTCTACAAGA ACCAGTTGGCTCTGCCAGCAGCGTACCTGCATTTGCACCAGATCTATCATAATGCCCCCT CCCCCCCCCCCAGCTTGTTTATCATCTATCATATTTCTGGGTTTTCTAAGGGGTTCGCAG TTTTGCCACAAAGCCTGTATCCTAGTTTATATCTCGAGTTATTGTACCCAAGGAATCCGT TATACAGTGAGCATGAAGATAGAAATGCGTTCATGCGTGTTTTGTGATATGGACAATCTG TGCTTACATCAGGTTATTTTGAGCAATAAAAATCTCCATTTATG