Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0246500-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:7740991:7749358:1 gene:Os03g0246500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os03t0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non-protein coding transcript. (Os03t0246500-03)
Sequence	ATGGATCGTCGCAGCTGGCCATGGAAGAAGAAATCATCTGACAAATCATCTAGCGCAGAT GCTTCTCAAAATTCCAATCAAGCTGAGCAGGATGACAAAGCTCCAAAATATGTGCAGATT TCACCAGAAACATATGCACACCTTACTGAATCAGAAGAACAAGTGAAAACCTTAAATGAA AAGGTGAAGGCCTTGAATGAGGACCTCTCTGCGGCACAGTCTGAGATCACTACTAAAGAT GCCCTAGTGAAACAGCATGCTAAAGTTGCTGAAGAAGCTGTATCAGGTTGGGAGAAAGCT GAAGCGGAGGCCTCAGCACTGAAGCTTCAGCTAGAAACTGTTACATTGGCTAAGCTAGCG GCTGAGGAAAGAGCTGCCCATCTGGATGGTGCTCTGAAAGAATGCATGAAGCAAGTAAGG ACTGTGAAAGAAGAAGGTGAGCAGAAGCTACATGATGTAGTCTTTGCAAAAACCAAACAG TGGGAGAAGATAAAGGCCGAGTTTGAAGCAAAGTTACTTGAGTTTGAACAGGAGCTCATT AGGGCTGGTGCTGAGAATGATGCACTCTCAAGGTCACTCGAGGAACGGGGAGACCTTTTG ATGAAGATTGATGAGGAAAAGGCTCGAGCAGAGGCTGAAATCGAAGTCTTGAAAAACACA ATTCAGTCAGGTGAAAGGGAAATTAATTCACTGAAATATGAAATTCATGTTGTTTCCAAA GAGCTTGAAATCCGCAATGAGGAAAAGAACATGAGTGTGCGCTCAGCTGATGTTGCAACT AAACAGCACATGGAGGATGTAAAGAAAATATCAAAACTGGAAGCTGAATGCCAAAGATTA CGGGGTCTTGTTCGAAAGAAGTTACCAGGGCCTGCTGCATTAGCTCAAATGAAAATGGAA GTGGAGAGCTTGGGCAGAGATTATGGAGAAAGCAGGTTGCGACGATCGCCTGCAAAGAAT TCCAGCTTCCATCGTCCTATGTCCCCTATGTCCCCTGTTCCTGATTATGCATTTGAAAAC TTACAGCACATGCAGAAAGAGAATGAGTTTCTGACTGCACGTTTGTTATCCATGGAAGAT GAAACCAAAATGCTAAAAGAGGCCTTGGCCAAAAGGAATAGTGAGCTGCAAACATCAAGA AACATGTATGCTAAGACAGCAGGCAAACTCCGTGGCTTGGAAGTTCAAATGTTGACTGGT AGCCAACGTAAGAGTACTTCGAATCCCAACATGGATATCCACTTTGATGGTGCACTGAGT CAAAATGGAAGCAACCCACCTAGTATGACCTCCATGTCTGAAGATGGTGTTGATGATGAA GGAAGTTGCACTGAATCTTGGGCCAATGCTCTGGTCTCTGAGCTCTCACACATCAAGAAA GAGAAAGGAGCTAAGAGCAGTGTGACAGAAGGCTCCAATCGGTTGGAACTCATGGATGAC TTCCTAGAGATGGAGAAACTAGCCTGTTTGTCATCTGAAGCAAATGGACATGTCAGTACT GTTGAAAAAATGAAGATTGATGATACGGAAGCTTCTTTGTCTGGTATTACTGAAAGAGAT GGTGTTAAAGATTCGCAGTCAGTTTTGGCATTGCCAGGGACTCCATCTAATAAACTGCAG CTGTCTGACAGCTCTCCACTCTTGAAACTACAGTCTAGAATATCTTCCTTGCTTGATTCT GAATCACCACAGAACAATGCTGGAAATATACTAGATAGTATCAGAAATATTCTAAAGGAT ATTGAAGATGAGGCAGATTCATCAAATGATAGCAAGACTCATCATGGTGACATGGTTGAA GTAGCTGACAATGGATCACTAATGAAGCATTCAAGCAGCGGGAGCAAGCATGCTATGGAT CAAGAACTAGTCAATGCCATTTTAAAGATTCAAGACTTCGTTAAGTCACTTGACCAAGAA GTGTCCAAGTTCCAAGGGCAGTCTTCAGATTGTGATGGTTTATGTGACAAAATACAGCAG TTCTCTGCACTAGTAGAGAAAGCTCTATCAAATGAGAATGTTCTAAATGACATTGTTATG ACGCTGTCTCTTATCTTGTCAGGAACCAGTGAGATTAAGTTCATGATGTTGAAAGAGAAC ACCAAAGAAGCTGACAATAATAATTTGGATTATGTTGATAAAGTGACTTTACTTGAAAAT AAAGTGCAGCTTGAGCCACTAAAGGACAGCATTTCTGGTCCTTGCCTTCCTCGTTCATCT TCTGATCCGGAGATTGAAGGTCCTACTGACTCTGGATGTGATGTCAAGACTGCTGTGCAG ATATGCTCATCAGAGGAATTCGAGCAACTTAAATCTGAGAAGTTGAATTTGGAGGCAGAA TTATCAAAGTGCAATGAAGTTATAGAAGAGACAAAATTTAGGTTTAAGGAGTTGGAGAAG AGCCTTGAAGAGTTGACATCCAAGTTGGTTGCCAGTGAGAAATCAAACAGCTTGGCTGAG ACACAGTTGAAGTGTATGGCTGAATCCTACAAGTCACTTGAGTCAAGGAAAGCTGAATTA GAAAACGAAATAAAAGTGCTGCAGTCCAAAATAGAAGTTTTGACAGCTGAACTTGATGAT GAAAGACAAAATCATCAGGAGGATATAACAAGATATAGAGATCTCGAGGAGAAGATTGAA AGGTATGAGAACGAGAGGAATTCAATGTGTGTGGATGAGGATGCAGATACCAAAGCAAAG CAGGAGAAAGAGATCGCAGCTGCAGCAGAGAAACTTGCAGAATGCCAGGAGACGATATTG ATTCTTGGTCGCCAACTACAATCTATGCGTCCTCCAGCAGAATCAATGGGTTCCTCGCCA AACCAGCGAATGGAAGATTTCCTGCAGGACGCGGCTGGAACAACCGAAGGTGTTGAATAC TCACAGAAGCCAACAGGTCAACTGGATACAGATCAGGAAATGCATGCATCAGGAAATGAA TCCCCAGTGAATGGGTACAAGACACACAATGCCCCCTCTGAAGCGGACGGAAGCCCTTTC CTTTCACCAAACGGATCCAAGCGCCCAAAGCATAGATCGAGATCATCTTCCTCAATTTCT AACCAATTGCCCGAGAAACAAAACCGGGGTTTCAGTCGGTTCTTCGCCAAGGAAAAGATC TAA

Peptide Sequence

PEP ID	Os03t0246500-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:7740991:7749358:1 gene:Os03g0246500 transcript:Os03t0246500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os03t0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non-protein coding transcript. (Os03t0246500-03)
Sequence	MDRRSWPWKKKSSDKSSSADASQNSNQAEQDDKAPKYVQISPETYAHLTESEEQVKTLNE KVKALNEDLSAAQSEITTKDALVKQHAKVAEEAVSGWEKAEAEASALKLQLETVTLAKLA AEERAAHLDGALKECMKQVRTVKEEGEQKLHDVVFAKTKQWEKIKAEFEAKLLEFEQELI RAGAENDALSRSLEERGDLLMKIDEEKARAEAEIEVLKNTIQSGEREINSLKYEIHVVSK ELEIRNEEKNMSVRSADVATKQHMEDVKKISKLEAECQRLRGLVRKKLPGPAALAQMKME VESLGRDYGESRLRRSPAKNSSFHRPMSPMSPVPDYAFENLQHMQKENEFLTARLLSMED ETKMLKEALAKRNSELQTSRNMYAKTAGKLRGLEVQMLTGSQRKSTSNPNMDIHFDGALS QNGSNPPSMTSMSEDGVDDEGSCTESWANALVSELSHIKKEKGAKSSVTEGSNRLELMDD FLEMEKLACLSSEANGHVSTVEKMKIDDTEASLSGITERDGVKDSQSVLALPGTPSNKLQ LSDSSPLLKLQSRISSLLDSESPQNNAGNILDSIRNILKDIEDEADSSNDSKTHHGDMVE VADNGSLMKHSSSGSKHAMDQELVNAILKIQDFVKSLDQEVSKFQGQSSDCDGLCDKIQQ FSALVEKALSNENVLNDIVMTLSLILSGTSEIKFMMLKENTKEADNNNLDYVDKVTLLEN KVQLEPLKDSISGPCLPRSSSDPEIEGPTDSGCDVKTAVQICSSEEFEQLKSEKLNLEAE LSKCNEVIEETKFRFKELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAEL ENEIKVLQSKIEVLTAELDDERQNHQEDITRYRDLEEKIERYENERNSMCVDEDADTKAK QEKEIAAAAEKLAECQETILILGRQLQSMRPPAESMGSSPNQRMEDFLQDAAGTTEGVEY SQKPTGQLDTDQEMHASGNESPVNGYKTHNAPSEADGSPFLSPNGSKRPKHRSRSSSSIS NQLPEKQNRGFSRFFAKEKI

Transcript Sequence

Transcript ID	Os03t0246500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:7740991:7749358:1 gene:Os03g0246500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF869, plant family protein. (Os03t0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non-protein coding transcript. (Os03t0246500-03)
Sequence	GCGTCTCTCCTCCTTCCCCCACCACCACCGCCACCGCCACTCCATTGATGCTAGATAGGG AGCAGGGGCGAGAGGTGGGCAGCCGCATTACCAAACCGGGAGACGCCGCCTCGAGCTAGT GCTCGTTGCAGCAGCAGGAGGAGGTGGTGGTGGTGGGATTCCAGAGGGAAGAAGAAAAGG TTGCGGGAGCAAAAGGGGAGGAGGGAGGCGAGGGCCGAGGGGAAAAAGGGAGAGGAGTGG GGGTGAATCATCCAATCCACAGTCCAGCTCCTGGTGTGCAGTGCGGCGCTGATCGGTTGA GGAGGTGTGAGCGGCAAGGTACGCGTGGCCGTCGTCGTCTCCGCCGCCGCCGAAGCCACC GACACGCCGGCCGGGTCGATCGGAGCCGCGGGTCAGATCCAGTTCACGCCGGAATTGCGG CGGATTCCGGCGACCGTGACCCCGCCGGATCTGCATTCCGCGTGGAGCCTCCCCGAGCCG CGCCCTCGCCTCCCATACATTGTGCCTGATGGATCGTCGCAGCTGGCCATGGAAGAAGAA ATCATCTGACAAATCATCTAGCGCAGATGCTTCTCAAAATTCCAATCAAGCTGAGCAGGA TGACAAAGCTCCAAAATATGTGCAGATTTCACCAGAAACATATGCACACCTTACTGAATC AGAAGAACAAGTGAAAACCTTAAATGAAAAGGTGAAGGCCTTGAATGAGGACCTCTCTGC GGCACAGTCTGAGATCACTACTAAAGATGCCCTAGTGAAACAGCATGCTAAAGTTGCTGA AGAAGCTGTATCAGGTTGGGAGAAAGCTGAAGCGGAGGCCTCAGCACTGAAGCTTCAGCT AGAAACTGTTACATTGGCTAAGCTAGCGGCTGAGGAAAGAGCTGCCCATCTGGATGGTGC TCTGAAAGAATGCATGAAGCAAGTAAGGACTGTGAAAGAAGAAGGTGAGCAGAAGCTACA TGATGTAGTCTTTGCAAAAACCAAACAGTGGGAGAAGATAAAGGCCGAGTTTGAAGCAAA GTTACTTGAGTTTGAACAGGAGCTCATTAGGGCTGGTGCTGAGAATGATGCACTCTCAAG GTCACTCGAGGAACGGGGAGACCTTTTGATGAAGATTGATGAGGAAAAGGCTCGAGCAGA GGCTGAAATCGAAGTCTTGAAAAACACAATTCAGTCAGGTGAAAGGGAAATTAATTCACT GAAATATGAAATTCATGTTGTTTCCAAAGAGCTTGAAATCCGCAATGAGGAAAAGAACAT GAGTGTGCGCTCAGCTGATGTTGCAACTAAACAGCACATGGAGGATGTAAAGAAAATATC AAAACTGGAAGCTGAATGCCAAAGATTACGGGGTCTTGTTCGAAAGAAGTTACCAGGGCC TGCTGCATTAGCTCAAATGAAAATGGAAGTGGAGAGCTTGGGCAGAGATTATGGAGAAAG CAGGTTGCGACGATCGCCTGCAAAGAATTCCAGCTTCCATCGTCCTATGTCCCCTATGTC CCCTGTTCCTGATTATGCATTTGAAAACTTACAGCACATGCAGAAAGAGAATGAGTTTCT GACTGCACGTTTGTTATCCATGGAAGATGAAACCAAAATGCTAAAAGAGGCCTTGGCCAA AAGGAATAGTGAGCTGCAAACATCAAGAAACATGTATGCTAAGACAGCAGGCAAACTCCG TGGCTTGGAAGTTCAAATGTTGACTGGTAGCCAACGTAAGAGTACTTCGAATCCCAACAT GGATATCCACTTTGATGGTGCACTGAGTCAAAATGGAAGCAACCCACCTAGTATGACCTC CATGTCTGAAGATGGTGTTGATGATGAAGGAAGTTGCACTGAATCTTGGGCCAATGCTCT GGTCTCTGAGCTCTCACACATCAAGAAAGAGAAAGGAGCTAAGAGCAGTGTGACAGAAGG CTCCAATCGGTTGGAACTCATGGATGACTTCCTAGAGATGGAGAAACTAGCCTGTTTGTC ATCTGAAGCAAATGGACATGTCAGTACTGTTGAAAAAATGAAGATTGATGATACGGAAGC TTCTTTGTCTGGTATTACTGAAAGAGATGGTGTTAAAGATTCGCAGTCAGTTTTGGCATT GCCAGGGACTCCATCTAATAAACTGCAGCTGTCTGACAGCTCTCCACTCTTGAAACTACA GTCTAGAATATCTTCCTTGCTTGATTCTGAATCACCACAGAACAATGCTGGAAATATACT AGATAGTATCAGAAATATTCTAAAGGATATTGAAGATGAGGCAGATTCATCAAATGATAG CAAGACTCATCATGGTGACATGGTTGAAGTAGCTGACAATGGATCACTAATGAAGCATTC AAGCAGCGGGAGCAAGCATGCTATGGATCAAGAACTAGTCAATGCCATTTTAAAGATTCA AGACTTCGTTAAGTCACTTGACCAAGAAGTGTCCAAGTTCCAAGGGCAGTCTTCAGATTG TGATGGTTTATGTGACAAAATACAGCAGTTCTCTGCACTAGTAGAGAAAGCTCTATCAAA TGAGAATGTTCTAAATGACATTGTTATGACGCTGTCTCTTATCTTGTCAGGAACCAGTGA GATTAAGTTCATGATGTTGAAAGAGAACACCAAAGAAGCTGACAATAATAATTTGGATTA TGTTGATAAAGTGACTTTACTTGAAAATAAAGTGCAGCTTGAGCCACTAAAGGACAGCAT TTCTGGTCCTTGCCTTCCTCGTTCATCTTCTGATCCGGAGATTGAAGGTCCTACTGACTC TGGATGTGATGTCAAGACTGCTGTGCAGATATGCTCATCAGAGGAATTCGAGCAACTTAA ATCTGAGAAGTTGAATTTGGAGGCAGAATTATCAAAGTGCAATGAAGTTATAGAAGAGAC AAAATTTAGGTTTAAGGAGTTGGAGAAGAGCCTTGAAGAGTTGACATCCAAGTTGGTTGC CAGTGAGAAATCAAACAGCTTGGCTGAGACACAGTTGAAGTGTATGGCTGAATCCTACAA GTCACTTGAGTCAAGGAAAGCTGAATTAGAAAACGAAATAAAAGTGCTGCAGTCCAAAAT AGAAGTTTTGACAGCTGAACTTGATGATGAAAGACAAAATCATCAGGAGGATATAACAAG ATATAGAGATCTCGAGGAGAAGATTGAAAGGTATGAGAACGAGAGGAATTCAATGTGTGT GGATGAGGATGCAGATACCAAAGCAAAGCAGGAGAAAGAGATCGCAGCTGCAGCAGAGAA ACTTGCAGAATGCCAGGAGACGATATTGATTCTTGGTCGCCAACTACAATCTATGCGTCC TCCAGCAGAATCAATGGGTTCCTCGCCAAACCAGCGAATGGAAGATTTCCTGCAGGACGC GGCTGGAACAACCGAAGGTGTTGAATACTCACAGAAGCCAACAGGTCAACTGGATACAGA TCAGGAAATGCATGCATCAGGAAATGAATCCCCAGTGAATGGGTACAAGACACACAATGC CCCCTCTGAAGCGGACGGAAGCCCTTTCCTTTCACCAAACGGATCCAAGCGCCCAAAGCA TAGATCGAGATCATCTTCCTCAATTTCTAACCAATTGCCCGAGAAACAAAACCGGGGTTT CAGTCGGTTCTTCGCCAAGGAAAAGATCTAAAAAAAGCTGCTTGCAAGATGCTAGCGTTG GCCTGCTGATTCTTTACTGTGAATGACGGGATGATGCAAGCCACGAGTTTTCTGTAGAGC TACTTGTGTATTCTTCGAGGTGACGCCTTCAGTTGCTGGAATAATTCTTCTTCGCTCGAA GTCGAGCGGTTAAGGCCAGATTTATTTGTGAGAATGTTTAGCCATCCGTACCTCCGTCCC GCTAGAGTGTTCTGGGTTGCCGTGTGTTTGAAACCTCACTGAGACCTCACTGTACATGTG CTTACTTGCATGAAGATAATCGTTGTTGGTTTGTGTGTCAGTGTCACACACCTCTTGTGA ATTAACCTGTGTAGTTTGCTCAAACCAAGCTTGCTGTACAGTTAACCTGGATTAATCCGA AGGTTATTTGTTGTGCTTGTTGACCATTGT