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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0239300-03
CDS Infomation

cds chromosome:IRGSP-1.0:3:7353147:7354138:-1 gene:Os03g0239300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0239300-01);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-02);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-03)
Sequence

ATGAAGAGCAGCAGCCAAGAAGCGGGAGAGGAGGTGTCCGAGATCAGCAGCCAGGCGGCG
TCCAACAACAACGAGACGTGCAACTCCTCCTCCGGCAAGGTCAGCCTCGACCTGTCGCTC
ACCGTCGCCGCCGCCGCCGCGGCGGCTGCCTCCGCCACCGAGTCGAGCACCACGGACAGC
GGCGGCACGCGGCCGGCGGCGACGGCGACGGCGACGGCGCGCGAGCCGGCGCGGGTGTTC
ACGTGCAACTACTGCCAGAGGAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAAC
GCGCACCGGCGGGAGCGCACGCTGGCCCGGCGCGCCGTGCGGCTCGACGCGTTCCCCTAC
GGCTACGCCGACGTGGCCTCGCTGCCGCTGTACGGCGCCGGCCTGTACCCCATCGGCATC
CAGGCGCACGCGTCGGTGCACCACCACCACCCTGGCGTGGCGGCGCCGGCGGGGCGCGCC
GAGTTGAGGTCGGCGCGCGCGCTGCTCGGCCCGATGCCGTTCTTCGTGCAGGCGGCAGGC
GATGAGGATGCCAGCTTCGGGTGGCCGGGCAGCTTCAGGCCACCGCCCACCGCCGCCACC
ACCATCCCCGCCGCCGCCGCCGCCCCGGTCGCCGTCAACTCCGGCTCCTCCAACTCCAAC
CACGGCGGCAGCGTCGTCGTGCAGGCCGCCGCCGACGAGCCCGACCTCACACTTAGACTC
TAG

Peptide Sequence

PEP ID

Os03t0239300-03
PEP Infomation

pep chromosome:IRGSP-1.0:3:7353147:7354138:-1 gene:Os03g0239300 transcript:Os03t0239300-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0239300-01);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-02);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-03)
Sequence

MKSSSQEAGEEVSEISSQAASNNNETCNSSSGKVSLDLSLTVAAAAAAAASATESSTTDS
GGTRPAATATATAREPARVFTCNYCQRKFFSSQALGGHQNAHRRERTLARRAVRLDAFPY
GYADVASLPLYGAGLYPIGIQAHASVHHHHPGVAAPAGRAELRSARALLGPMPFFVQAAG
DEDASFGWPGSFRPPPTAATTIPAAAAAPVAVNSGSSNSNHGGSVVVQAAADEPDLTLRL

Transcript Sequence

Transcript ID

Os03t0239300-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:7353147:7354138:-1 gene:Os03g0239300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os03t0239300-01);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-02);Zinc finger, C2H2-type domain containing protein. (Os03t0239300-03)
Sequence

GTTTTGTCTGAATTTCTGAATGCAGCTGAGGCAGAAATCGGTGAGAGTGGTAGGTGTTTG
TTGCGATCGTTGAAGCATGAAGAGCAGCAGCCAAGAAGCGGGAGAGGAGGTGTCCGAGAT
CAGCAGCCAGGCGGCGTCCAACAACAACGAGACGTGCAACTCCTCCTCCGGCAAGGTCAG
CCTCGACCTGTCGCTCACCGTCGCCGCCGCCGCCGCGGCGGCTGCCTCCGCCACCGAGTC
GAGCACCACGGACAGCGGCGGCACGCGGCCGGCGGCGACGGCGACGGCGACGGCGCGCGA
GCCGGCGCGGGTGTTCACGTGCAACTACTGCCAGAGGAAGTTCTTCAGCTCGCAGGCGCT
GGGCGGGCACCAGAACGCGCACCGGCGGGAGCGCACGCTGGCCCGGCGCGCCGTGCGGCT
CGACGCGTTCCCCTACGGCTACGCCGACGTGGCCTCGCTGCCGCTGTACGGCGCCGGCCT
GTACCCCATCGGCATCCAGGCGCACGCGTCGGTGCACCACCACCACCCTGGCGTGGCGGC
GCCGGCGGGGCGCGCCGAGTTGAGGTCGGCGCGCGCGCTGCTCGGCCCGATGCCGTTCTT
CGTGCAGGCGGCAGGCGATGAGGATGCCAGCTTCGGGTGGCCGGGCAGCTTCAGGCCACC
GCCCACCGCCGCCACCACCATCCCCGCCGCCGCCGCCGCCCCGGTCGCCGTCAACTCCGG
CTCCTCCAACTCCAACCACGGCGGCAGCGTCGTCGTGCAGGCCGCCGCCGACGAGCCCGA
CCTCACACTTAGACTCTAGCTGTCCCATCCATCCATCCATTAGTCTGGTGTAACATTCAT
CAGGTTGCTCCTGATCATCTCCTCCGTTTGTGAGTAGAATTCTTGCTTGCTTGCTTGCTT
CGCTCTCGATCCTGCTGCTTGAGCTTGACATCAACCAACCTGCTAGTAAATTACTATTGC
TTCAAATGCATGCGTGGAAGTATTGTTTTTGT