Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0239200-04
CDS Infomation	cds chromosome:IRGSP-1.0:3:7347583:7351722:1 gene:Os03g0239200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CONSTANS interacting protein 6. (Os03t0239200-01);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-02);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-03);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-04)
Sequence	ATGTTCGGCGACTCCGACGGATCCAAGGACGCCAACCCCGGGGCGCCGCCCTCCACCACC GACCCGCCCTTCCCCAACCGCGAGCTCACCCTCAGCAGCTACCTCTGCGAGAAGCCGACG CTCGCCTCCGCCGCCGCCGGTGGCGGTGGCGGTGCCGGCCCGTCCTCGCCGCCGAACCCT GCTGCAGCCGCGGCTGGCGACGACGGCAAGCACTGCGTCGAGCGCGACTTCCTCCACCTC TCCGCGCCCAAGCGCGGGGATCCACCCGGCGACGACTCATCCGTCGTCGGCGGTAAGAAG CCCCGCCTCGACTCCCTCCAGCTCTCGCTGTCCCTTAACTCCGACGGCCCCGCTGCTCCG CCGTCGTCCCAGCCGCCGCTCGCCTCGCTCCTCCAGCCCGTCCCCGCGACCGATGGAGAT CTACGGGGAGCGGCGGCGGCGGCGGCCGTGCCCGCGGCCCCCGCCAGGAGGACCTACAGC GCGACGACGGCGCGCACCCGCAGCATCAACTCCGACGACATGTCCTACTCCTACTCCATC TTCTCGCACAACCCTAGCTGTTCCCTCACGCACAACTCCACCGACATCTACGCCGCCGGT GAAGGTACCAACGGCTCCGTTCACAGCCGATTCAATTTCCGCCCCATGGGGGACGGCAGC GTCGCCTTCGCCACGCCGCCGCTGAAGGAGGGCACGTCGTCGTTCTTCCCCACGGAGCTC CCTGCGAGGATGGCGGCGGCGGCCGCGGCGGCTGCTGCCAGCGCGGGTGGCAGCTTCGAC GGCGGTCGCGGTGGGCTTCACGCGTCGCGCCCTGACAAGATCCTGCGGGATATTGTGTCC GACTCTGTGACGGCTATGGCGCAGGTGCTGCAGGATTTCCCAAGCGAACGACTGGAGTTG CTGCGAGAGGCAGTGCGGGGCATGATTGACTCTCATGAGAAGAGGGATGAGCTGGCCAGC CTGCAGCGGAAGCTTGAGCGCCGGTCAGACCTGACCACCGAGACATTGGGGAGGGCGAAC AGGACGCAGCTTGAGATCCTGGTGGCCATCAAGACTGGAATCGCGACGTTTGTCACCGGT AAAGGCCGGGTACCAAGCAGTGAGCTTGTAGAAATGTTCCTCATGACACGGTGCCGCAAC CTGAACTGTAAGAGCACGCTGCCAGTGGATGACTGCGATTGCAAGATTTGCTCCACCAAG AAAGGGTTCTGCAGCGCATGCACGTGTTCAGTATGCCACAAGTTTGACTGTGCTGCAAAT ACCTGCACCTGGGTTGGGTGTGATGTCTGCGGACACTGGTGTCATGTTGCATGCGCGCTG GAGAGGAATTTAATCAGGCCAGGGCCGACGCTGAAGGGGCCAATTGGGACGACTGAGATG CAGTTCCAATGCCTTGCTTGCAATCATTCTTCTGAAATGTTTGGATTTGTCAAGGAGGTG TTCAATTGCTGCGCAGAGAACTGGAATGCTGAGACTCTGATGAAAGAGCTGGATTTTGTT AGGAAGATATTTGCTGGTTGTGAGGATTTTGAGGGCAAGGGGCTTCATGCCAAGGCTGAA GAGGTCCTCAGCTTGCTTGGAAAGAAAATTATTTCTCCTTTGGATGCAACAAACAGTATC TTACAATTCTTCAAATATGGAGTTACAGATTATTCTGTTACTGGTAGCACGTCCAAAGGT ATATTGGCAGCTCAGGCAAGTCAATCTACAGATATGCGGTCTCTTCAAACTCCAACGATC ACACCACCGAAATCCTCATTCAACTTCAAGACCACTACTTCCATTCTTGACACCGATGCA CTTAAGCCCAGCCCAAAGCCACTCTCTATTGAACCCCATTTCAGCACCGCTTCTAAGGAG GATGACTCTAGCCTCGAAACCATCGTGAAATGCAAGGAAGCTGAAGCAAAACTCTTCCAA AAGTTGGCCGATGATGCCAGGAAGGAAGTAGATAGCTACCGCCAGATTGTCCGCTCCAGG ACTCAGAAGCTAGAGGAGGAGTATGCTGCGAAGCTGGCAAAAGTATGCTTCCAAGAAACA GAGGAGAAGAGGAGGAAGAAGCTGGAGGAGCTCAAGATGCTGGAGAATTCGCACTACGAC TACCTCAAGATGAAAATGCGGATGCAGACCGATATCCAGGGCTTGCTCGAGCGGATGGAA GCCACAAAGAAGATGTGGGTATAG

Peptide Sequence

PEP ID	Os03t0239200-04
PEP Infomation	pep chromosome:IRGSP-1.0:3:7347583:7351722:1 gene:Os03g0239200 transcript:Os03t0239200-04 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CONSTANS interacting protein 6. (Os03t0239200-01);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-02);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-03);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-04)
Sequence	MFGDSDGSKDANPGAPPSTTDPPFPNRELTLSSYLCEKPTLASAAAGGGGGAGPSSPPNP AAAAAGDDGKHCVERDFLHLSAPKRGDPPGDDSSVVGGKKPRLDSLQLSLSLNSDGPAAP PSSQPPLASLLQPVPATDGDLRGAAAAAAVPAAPARRTYSATTARTRSINSDDMSYSYSI FSHNPSCSLTHNSTDIYAAGEGTNGSVHSRFNFRPMGDGSVAFATPPLKEGTSSFFPTEL PARMAAAAAAAAASAGGSFDGGRGGLHASRPDKILRDIVSDSVTAMAQVLQDFPSERLEL LREAVRGMIDSHEKRDELASLQRKLERRSDLTTETLGRANRTQLEILVAIKTGIATFVTG KGRVPSSELVEMFLMTRCRNLNCKSTLPVDDCDCKICSTKKGFCSACTCSVCHKFDCAAN TCTWVGCDVCGHWCHVACALERNLIRPGPTLKGPIGTTEMQFQCLACNHSSEMFGFVKEV FNCCAENWNAETLMKELDFVRKIFAGCEDFEGKGLHAKAEEVLSLLGKKIISPLDATNSI LQFFKYGVTDYSVTGSTSKGILAAQASQSTDMRSLQTPTITPPKSSFNFKTTTSILDTDA LKPSPKPLSIEPHFSTASKEDDSSLETIVKCKEAEAKLFQKLADDARKEVDSYRQIVRSR TQKLEEEYAAKLAKVCFQETEEKRRKKLEELKMLENSHYDYLKMKMRMQTDIQGLLERME ATKKMWV

Transcript Sequence

Transcript ID	Os03t0239200-04
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:7347583:7351722:1 gene:Os03g0239200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CONSTANS interacting protein 6. (Os03t0239200-01);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-02);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-03);Protein of unknown function DUF1423, plant domain containing protein. (Os03t0239200-04)
Sequence	GCCTCTGCCGCCTCTCCTTCCCACCCACCTCTGCTCTGCTCCTCATCGTCGTCGCGCGGC CAGCTCAGCCGGCCGGAGAATCCACCGAATCCGGCGCGAATCCCGCAGCCATGTTCGGCG ACTCCGACGGATCCAAGGACGCCAACCCCGGGGCGCCGCCCTCCACCACCGACCCGCCCT TCCCCAACCGCGAGCTCACCCTCAGCAGCTACCTCTGCGAGAAGCCGACGCTCGCCTCCG CCGCCGCCGGTGGCGGTGGCGGTGCCGGCCCGTCCTCGCCGCCGAACCCTGCTGCAGCCG CGGCTGGCGACGACGGCAAGCACTGCGTCGAGCGCGACTTCCTCCACCTCTCCGCGCCCA AGCGCGGGGATCCACCCGGCGACGACTCATCCGTCGTCGGCGGTAAGAAGCCCCGCCTCG ACTCCCTCCAGCTCTCGCTGTCCCTTAACTCCGACGGCCCCGCTGCTCCGCCGTCGTCCC AGCCGCCGCTCGCCTCGCTCCTCCAGCCCGTCCCCGCGACCGATGGAGATCTACGGGGAG CGGCGGCGGCGGCGGCCGTGCCCGCGGCCCCCGCCAGGAGGACCTACAGCGCGACGACGG CGCGCACCCGCAGCATCAACTCCGACGACATGTCCTACTCCTACTCCATCTTCTCGCACA ACCCTAGCTGTTCCCTCACGCACAACTCCACCGACATCTACGCCGCCGGTGAAGGTACCA ACGGCTCCGTTCACAGCCGATTCAATTTCCGCCCCATGGGGGACGGCAGCGTCGCCTTCG CCACGCCGCCGCTGAAGGAGGGCACGTCGTCGTTCTTCCCCACGGAGCTCCCTGCGAGGA TGGCGGCGGCGGCCGCGGCGGCTGCTGCCAGCGCGGGTGGCAGCTTCGACGGCGGTCGCG GTGGGCTTCACGCGTCGCGCCCTGACAAGATCCTGCGGGATATTGTGTCCGACTCTGTGA CGGCTATGGCGCAGGTGCTGCAGGATTTCCCAAGCGAACGACTGGAGTTGCTGCGAGAGG CAGTGCGGGGCATGATTGACTCTCATGAGAAGAGGGATGAGCTGGCCAGCCTGCAGCGGA AGCTTGAGCGCCGGTCAGACCTGACCACCGAGACATTGGGGAGGGCGAACAGGACGCAGC TTGAGATCCTGGTGGCCATCAAGACTGGAATCGCGACGTTTGTCACCGGTAAAGGCCGGG TACCAAGCAGTGAGCTTGTAGAAATGTTCCTCATGACACGGTGCCGCAACCTGAACTGTA AGAGCACGCTGCCAGTGGATGACTGCGATTGCAAGATTTGCTCCACCAAGAAAGGGTTCT GCAGCGCATGCACGTGTTCAGTATGCCACAAGTTTGACTGTGCTGCAAATACCTGCACCT GGGTTGGGTGTGATGTCTGCGGACACTGGTGTCATGTTGCATGCGCGCTGGAGAGGAATT TAATCAGGCCAGGGCCGACGCTGAAGGGGCCAATTGGGACGACTGAGATGCAGTTCCAAT GCCTTGCTTGCAATCATTCTTCTGAAATGTTTGGATTTGTCAAGGAGGTGTTCAATTGCT GCGCAGAGAACTGGAATGCTGAGACTCTGATGAAAGAGCTGGATTTTGTTAGGAAGATAT TTGCTGGTTGTGAGGATTTTGAGGGCAAGGGGCTTCATGCCAAGGCTGAAGAGGTCCTCA GCTTGCTTGGAAAGAAAATTATTTCTCCTTTGGATGCAACAAACAGTATCTTACAATTCT TCAAATATGGAGTTACAGATTATTCTGTTACTGGTAGCACGTCCAAAGGTATATTGGCAG CTCAGGCAAGTCAATCTACAGATATGCGGTCTCTTCAAACTCCAACGATCACACCACCGA AATCCTCATTCAACTTCAAGACCACTACTTCCATTCTTGACACCGATGCACTTAAGCCCA GCCCAAAGCCACTCTCTATTGAACCCCATTTCAGCACCGCTTCTAAGGAGGATGACTCTA GCCTCGAAACCATCGTGAAATGCAAGGAAGCTGAAGCAAAACTCTTCCAAAAGTTGGCCG ATGATGCCAGGAAGGAAGTAGATAGCTACCGCCAGATTGTCCGCTCCAGGACTCAGAAGC TAGAGGAGGAGTATGCTGCGAAGCTGGCAAAAGTATGCTTCCAAGAAACAGAGGAGAAGA GGAGGAAGAAGCTGGAGGAGCTCAAGATGCTGGAGAATTCGCACTACGACTACCTCAAGA TGAAAATGCGGATGCAGACCGATATCCAGGGCTTGCTCGAGCGGATGGAAGCCACAAAGA AGATGTGGGTATAGGCTGGTAAAAATTCATCTGACGCCGCTGAATGTGTGAAAAATCTGT TGTACACCATTAGGATGTTTTCCGAGTTGTTGTATTCATCCTGTGATTTGTGTTACCAGT TAAAACTGTTATAAGCAGAGGGCCGCCTAACCTCGTGCTGGCAGATAACATAACTAGACA CCATCTCATTTAATTGCTTTCCGTTTGCAAACATATGGTGTGTCCCTTGCAAGTATGCAT ATCATTATCTCTAGTATGTGAACTGGAGTTGTTGGGTCATGCCATTTACATTCTGCTGCA TGACGATACTATATACAGATATTCTGGAGTTCTGGATCCATGAGACTTT