Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0235200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:7136651:7138895:1 gene:Os03g0235200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0235200-01)
Sequence

ATGGCGTCGCGCTCGCGCGCCGTCTCCTCCGGCTTCACGAAGGCGCCGACCTTCTCCGTC
ACCACCGCGTCGCAGCTCCACGACGCCATCGACCGCCTCCTCCCGCGGCTACGCGGCGAC
CCGTCCCTCGCCCCCGCCGCGCGCGCGCTCGCCGCGGCAGCCACCGCCTCGCTGCCGCCC
TCCACCGTCCTCTCCAACCGCCTCCTCCACCTGCTCTCCTCCCACCCAGCCACCCTCCCC
GACGCGCTCGCGCTCTTCTCCTCCATCGCGGCCCCGGACATCTGCTCCCACAACACCCTC
ATCTCCGCGCTCTCTCGCTCCCCGCGCCACCTCCCCTCCGCGCGGGAGCTGTTCGACCGA
ATGCCCCAGAGGGATCACTTCGCCTGGTCCGCCCTCGTCTCAGGTTACACCCGACACGGC
CAGCCCGAGGCCGCGCTCGCGCTCTACCGGCGGATGCAGGAGGAGCCGGGGAACGATGGC
GCGGACAACGAGTTCACCGCGTCCAGCGCGCTCGCGGCGGCCGCGGCCGCACGGTGCGGC
CGCGCGGGCAGGGAGCTGCACTGCCACGTCGTGAGGAGAGGGATCGACGCCGCCGGCGGC
GACGCCGTCCTGTGGAGCGCGCTCGCGGACATGTACGCCAAGTGCGGCCGCGTGGACGAC
GCGAGGAGGGTCTTCGACCGGATGCCGGTCCGGGACGCCGTCTCCTGGACGGCGATGGTG
GAGAGGTACTTCGACGGCGGCCGCGGCGGGGAAGGGTTCAGGCTGTTCCTCCACATGCTG
AGGACCCGAGGTGTTCGACCAAACGAGTTCACCTACGCGGGGGTTCTGCGCGCCTGCGCA
CAGTTCGCCGTCGAGAGCTTCGGGAGGCAGGTGCACGGCCGGATGGCGAAGAGCGGCACT
GGAGACTCCTGCTTCGCGGAGAGCGCGCTCCTCCGCATGTACTCCAAGTGCGGCGACATG
GGGAGCGCGGTGCGCGTGTTTGAGGCCATGGCGAAGCCGGACTTGGTGTCGTGGACGGCG
GTGATCTCCGGCTATGCGCAGAACGGGCAGCCGGAGGAGGCGCTGCGCTACTTCGACATG
TTCTTGAGGTCTGGAATTAAGCCTGATCATGTCACTTTTGTTGGTGTTCTGTCAGCGTGT
GCTCATGCCGGCCTGGTCGACAAGGGCCTCGAGATCTTCCATTCGATTAAGGAACAGTAT
TGCATTGAGCACACTGCTGATCATTACGCTTGCGTGATCGATCTCCTAAGCCGGTCAGGC
CAATTTGAGCGAGCAGAAAAGATGATAGGTAATATGGCAGTGAAACCTAACAAGTTCCTA
TGGGCGTCCTTGCTTGGTGGCTGCCGGATTCACAAGAATGTTGGCTTGGCAAGGCGGGCA
GCAGAAGCATTGTTCGAAATAGAACCCGAGAATCCAGCAACTTATGTAACTCTGGCAAAT
ATTTATGCCTCGGTTGGTCTTTTTGATGAGGTTGAGGATGTCAGAAGAATCATGGAATCA
AAGGGTATAACCAAAATGCCGGCCTCAAGTTGGATTGAAGTTGGGAGAAGAGTTCATGTG
TTCCTAGTTGGTGATAAATCGCATCCTAAAGCTGATGAAATCTATGCACTTCTGAAGAAG
CTGTATGTGAAAATGGTGGAAGAAGGGTATGTGGCGGACATTGAATTTGTTCTCCATGAT
GTCGAAGATGAGCAGAAGGAGCAGGACATTGGCTACCACAGCGAGCGGCTTGCTGTTGCA
TTTGGGATCATTGCCACTCCGGAGGGTTCCCCGATCAAGGTTTTCAAGAACCTGCGCATT
TGCGGGGACTGCCATGCTGCTATTAAGCTCATATCGCAGATTGTGCAGAGAGATATCATT
GTTAGGGACTCGAATAGGTTCCATCACTTCAAGGACGGGATATGTTCTTGCAGAGATTAC
TGGTGA

Peptide Sequence

PEP ID

Os03t0235200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:7136651:7138895:1 gene:Os03g0235200 transcript:Os03t0235200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0235200-01)
Sequence

MASRSRAVSSGFTKAPTFSVTTASQLHDAIDRLLPRLRGDPSLAPAARALAAAATASLPP
STVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDR
MPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCG
RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV
ERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGT
GDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDM
FLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSG
QFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLAN
IYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKK
LYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRI
CGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW

Transcript Sequence

Transcript ID

Os03t0235200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:7136651:7138895:1 gene:Os03g0235200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0235200-01)
Sequence

AATGGCGTCGCGCTCGCGCGCCGTCTCCTCCGGCTTCACGAAGGCGCCGACCTTCTCCGT
CACCACCGCGTCGCAGCTCCACGACGCCATCGACCGCCTCCTCCCGCGGCTACGCGGCGA
CCCGTCCCTCGCCCCCGCCGCGCGCGCGCTCGCCGCGGCAGCCACCGCCTCGCTGCCGCC
CTCCACCGTCCTCTCCAACCGCCTCCTCCACCTGCTCTCCTCCCACCCAGCCACCCTCCC
CGACGCGCTCGCGCTCTTCTCCTCCATCGCGGCCCCGGACATCTGCTCCCACAACACCCT
CATCTCCGCGCTCTCTCGCTCCCCGCGCCACCTCCCCTCCGCGCGGGAGCTGTTCGACCG
AATGCCCCAGAGGGATCACTTCGCCTGGTCCGCCCTCGTCTCAGGTTACACCCGACACGG
CCAGCCCGAGGCCGCGCTCGCGCTCTACCGGCGGATGCAGGAGGAGCCGGGGAACGATGG
CGCGGACAACGAGTTCACCGCGTCCAGCGCGCTCGCGGCGGCCGCGGCCGCACGGTGCGG
CCGCGCGGGCAGGGAGCTGCACTGCCACGTCGTGAGGAGAGGGATCGACGCCGCCGGCGG
CGACGCCGTCCTGTGGAGCGCGCTCGCGGACATGTACGCCAAGTGCGGCCGCGTGGACGA
CGCGAGGAGGGTCTTCGACCGGATGCCGGTCCGGGACGCCGTCTCCTGGACGGCGATGGT
GGAGAGGTACTTCGACGGCGGCCGCGGCGGGGAAGGGTTCAGGCTGTTCCTCCACATGCT
GAGGACCCGAGGTGTTCGACCAAACGAGTTCACCTACGCGGGGGTTCTGCGCGCCTGCGC
ACAGTTCGCCGTCGAGAGCTTCGGGAGGCAGGTGCACGGCCGGATGGCGAAGAGCGGCAC
TGGAGACTCCTGCTTCGCGGAGAGCGCGCTCCTCCGCATGTACTCCAAGTGCGGCGACAT
GGGGAGCGCGGTGCGCGTGTTTGAGGCCATGGCGAAGCCGGACTTGGTGTCGTGGACGGC
GGTGATCTCCGGCTATGCGCAGAACGGGCAGCCGGAGGAGGCGCTGCGCTACTTCGACAT
GTTCTTGAGGTCTGGAATTAAGCCTGATCATGTCACTTTTGTTGGTGTTCTGTCAGCGTG
TGCTCATGCCGGCCTGGTCGACAAGGGCCTCGAGATCTTCCATTCGATTAAGGAACAGTA
TTGCATTGAGCACACTGCTGATCATTACGCTTGCGTGATCGATCTCCTAAGCCGGTCAGG
CCAATTTGAGCGAGCAGAAAAGATGATAGGTAATATGGCAGTGAAACCTAACAAGTTCCT
ATGGGCGTCCTTGCTTGGTGGCTGCCGGATTCACAAGAATGTTGGCTTGGCAAGGCGGGC
AGCAGAAGCATTGTTCGAAATAGAACCCGAGAATCCAGCAACTTATGTAACTCTGGCAAA
TATTTATGCCTCGGTTGGTCTTTTTGATGAGGTTGAGGATGTCAGAAGAATCATGGAATC
AAAGGGTATAACCAAAATGCCGGCCTCAAGTTGGATTGAAGTTGGGAGAAGAGTTCATGT
GTTCCTAGTTGGTGATAAATCGCATCCTAAAGCTGATGAAATCTATGCACTTCTGAAGAA
GCTGTATGTGAAAATGGTGGAAGAAGGGTATGTGGCGGACATTGAATTTGTTCTCCATGA
TGTCGAAGATGAGCAGAAGGAGCAGGACATTGGCTACCACAGCGAGCGGCTTGCTGTTGC
ATTTGGGATCATTGCCACTCCGGAGGGTTCCCCGATCAAGGTTTTCAAGAACCTGCGCAT
TTGCGGGGACTGCCATGCTGCTATTAAGCTCATATCGCAGATTGTGCAGAGAGATATCAT
TGTTAGGGACTCGAATAGGTTCCATCACTTCAAGGACGGGATATGTTCTTGCAGAGATTA
CTGGTGACCCGCACACTGCATATATGAAGTAGTTTTGTCTCCCGATTGGAGCTACTATTA
CTCTTTGTACGGCTAATGTTAATATGCGGCAGCAACTGATCTGACCAAAGGTTTTCACTG
GTTCGAGTGATTAAGTTCTGGAAAAGAAATTCCTTGTCAGGCTGACCCTAGGTAAACGGT
CTCACCTTTTATCATTCGTGCCTATCCTGATGAAAGTTTATGTTATGTACGTTCGCTTTA
TTTTATTAACATATCCTGTAAATATGTTCATTTTTTGTTTGATTGTTGATTGGGGGTTAG
TAATAAAGCAATAGAATTGAAGGGG