Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0233200-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:7066551:7067714:-1 gene:Os03g0233200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Thaumatin-like protein; 23251-22305. (Os03t0233200-00)
Sequence

ATGGCAGAAGTTGGGCACGCGACGTCCGGCGCTGCTCGTGCCTTCCTCCGAATTCTCAAC
AAACTCCGCCATGTTCTCTCCAGTTCCCACCTAATATCTGAGGATATCACCAACGTCCAT
ATAAACAAGATAATCACCGGGCAAATTACTGTTGCTGCTAGGGTCCTATGGTCGCAGCTG
CAGTTCGGCGCTGAGGCAGTCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTAC
ACCGTCTGGCCGGCCACCTTGTCCGGCAACACCGCGGTGGCCGTCGGGGGCGGCGGGTTC
GAGCTGTCGCCCGGCGCCAACGTCTCGTTCCCGGCCCCGGCTGGTTGGTCCGGCCGCTTG
TGGGCGCGCACGGACTGTGCACCCTCCGGCACCGCGTCCCTCGCCTGCGTCACGGGGGAC
TGCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCTGTCACCCTCGCCGAGTTC
ACGCTGGGCGGCACCGACGGGAAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAAC
GTCGGCATCGGCGTGGCGGCGACGGGCGCCAGGGTGAACCGCTCGACGTGCGGGTACGCC
GGGTGCGTCGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCGGGGAAGGAG
AACGACCAGCAGTCCGGGGCGGCGGCGACGACGACGGTGGCGTGCCGGAGCGCGTGCGAG
GCGTTCGGGACGGCGGAGTACTGCTGCACGGGGGCGCACGGCGGGCCGGACAGCTGCGGG
CCGACGAGGTACTCGCGGCTGTTCAAGGCGGCGTGCCCGGCGGCGTACAGCTACGCGTAC
GACGACCCCACCAGCACGTTCACGTGCGGCACCGGCGCGCAGTACGTCATCACCTTCTGC
CCCGCGCAGCAGCAGTGA

Peptide Sequence

PEP ID

Os03t0233200-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:7066551:7067714:-1 gene:Os03g0233200 transcript:Os03t0233200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Thaumatin-like protein; 23251-22305. (Os03t0233200-00)
Sequence

MAEVGHATSGAARAFLRILNKLRHVLSSSHLISEDITNVHINKIITGQITVAARVLWSQL
QFGAEAVGTTVFTLRNNCTYTVWPATLSGNTAVAVGGGGFELSPGANVSFPAPAGWSGRL
WARTDCAPSGTASLACVTGDCGGAVSCSLGGAPPVTLAEFTLGGTDGKDFYDVSLVDGYN
VGIGVAATGARVNRSTCGYAGCVGDVNALCPAELQVAGKENDQQSGAAATTTVACRSACE
AFGTAEYCCTGAHGGPDSCGPTRYSRLFKAACPAAYSYAYDDPTSTFTCGTGAQYVITFC
PAQQQ

Transcript Sequence

Transcript ID

Os03t0233200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:7066551:7067714:-1 gene:Os03g0233200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Thaumatin-like protein; 23251-22305. (Os03t0233200-00)
Sequence

ATGGCAGAAGTTGGGCACGCGACGTCCGGCGCTGCTCGTGCCTTCCTCCGAATTCTCAAC
AAACTCCGCCATGTTCTCTCCAGTTCCCACCTAATATCTGAGGATATCACCAACGTCCAT
ATAAACAAGATAATCACCGGGCAAATTACTGTTGCTGCTAGGGTCCTATGGTCGCAGCTG
CAGTTCGGCGCTGAGGCAGTCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTAC
ACCGTCTGGCCGGCCACCTTGTCCGGCAACACCGCGGTGGCCGTCGGGGGCGGCGGGTTC
GAGCTGTCGCCCGGCGCCAACGTCTCGTTCCCGGCCCCGGCTGGTTGGTCCGGCCGCTTG
TGGGCGCGCACGGACTGTGCACCCTCCGGCACCGCGTCCCTCGCCTGCGTCACGGGGGAC
TGCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCTGTCACCCTCGCCGAGTTC
ACGCTGGGCGGCACCGACGGGAAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAAC
GTCGGCATCGGCGTGGCGGCGACGGGCGCCAGGGTGAACCGCTCGACGTGCGGGTACGCC
GGGTGCGTCGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCGGGGAAGGAG
AACGACCAGCAGTCCGGGGCGGCGGCGACGACGACGGTGGCGTGCCGGAGCGCGTGCGAG
GCGTTCGGGACGGCGGAGTACTGCTGCACGGGGGCGCACGGCGGGCCGGACAGCTGCGGG
CCGACGAGGTACTCGCGGCTGTTCAAGGCGGCGTGCCCGGCGGCGTACAGCTACGCGTAC
GACGACCCCACCAGCACGTTCACGTGCGGCACCGGCGCGCAGTACGTCATCACCTTCTGC
CCCGCGCAGCAGCAGTGA