Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0231700-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:6950861:6956156:-1 gene:Os03g0231700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to squalene monooxygenase. (Os03t0231700-01);Similar to Squalene monooxygenase 2 (EC 1.14.99.7). (Os03t0231700-02)
Sequence

ATGGATGCGGTCGCCGGCGCCGGGCAGCTCGTTGGCCTCGCCGCGGCCACGCTCCTCACG
GCGGCCTTCCTCGTCGCAGTGAAGATGGGGTGGCGGCGCCGCCGCCGCCAACGGGAGGTC
GCGCCGGAGGGTGGCTGCCGGGTTGTTGGCGGCGATGGGGGTGACCGGACGGACATCGTC
ATTGTTGGTGCCGGGGTCGCCGGATCTGCGCTCGCCTACACGCTCGGAAAGGATGGGCGA
CGAGTGCATGTTATAGAGCGGGACATGACGGAGCCTGATAGAATTGTTGGTGAACTGCTA
CAGCCTGGTGGCTATTTGAAATTGATGGAGCTGGGTCTTGAGGATTGTGTTGAAGAAATC
GATGCTCAGCGTGTCCTTGGTTACGCATTGTTGAAAGATGGGAGAAACACAAAGCTTTCT
TATCCCTTGGAGAAGTTCCATTCAGATGTTGCTGGTAGGAGCTTTCACAATGGACGGTTT
ATACAGAAGATGCGTCAAAAAGCTGCATCTTTGCCTAATGTTCATTTGGAGCAAGGAACC
GTTACATCATTGCTCGAAGAAGGTGGCACGGTTAAGGGTGTTCAATACAAGACAAAGTCA
GGTGAAGAATTAAAGGCCTATGCACCATTGACAATTGTATGCGATGGCTGTTTCTCAAAC
CTACGGCGTGTCCTGTGCTCTCCAAAGGTTGATGTGCCATCCTGTTTTGTTGGGTTGGTT
TTGGAGAATTGTCAACTTCCTCACCCAAACCATGGCCATGTTATCCTGGCTAATCCTTCA
CCTATCCTATGTTACCCGATAAGCAGCACTGAGATTCGTTGTTTGGTTGATATCCCTGGG
CAGAAGGTGCCTTCCATGGCAACCGGTGAAATGGCAAAATATCTCAAGACTGTGGTTGCA
CCTCAGATTCCTCCAGAACTCCATGATTCTTTCATTGCAGCAATTGATAAAGGAAGCATA
AGGACAATGCCAAATAGGAGTATGCCAGCTGCTCCACTTCCAACCCCTGGCGCGCTGTTG
ATGGGTGATGCATTCAACATGCGACATCCTTTAACTGGTGGTGGAATGACCGTTGCGTTT
TCTGACATTGTTGTCCTACGCAATCTTCTCAAGCCTCTCGGCAACCTGCACGATGCACCT
TCCCTGTGCAAGTACCTTGAATCGTTCTATACACTGCGGAAGCCTGTTGCTTCTACAATC
AACACACTGGCTGGTGCTCTGTACAAGGTCTTCTGTGCCTCAACTGACCAGGCTAAGAAT
GAGATGCGAGAAGCTTGCTTTGATTACTTGAGCCTTGGAGGAGTCTTCTCAAATGGGCCT
ATTGCTCTTCTCTCTGGCCTCAATCCTCGGCCTCTGAGTTTAGTAGCCCACTTCTTTGCT
GTTGCTATCTATGGCGTTGGACGCCTAATGCTCCCCGTCCCTTCACCTAAACGCATGTGG
ATCGGCGCGAGACTGGTTTCCGGTGCATGTGGTATCATCTTCCCAATCATCAAAGCTGAA
GGTGTGAGGCAAATGTTCTTCCCTGCTACAGTCCCTGCATATTACCGGGCCCCTCCTCCA
ATGGAATCCGGATAA

Peptide Sequence

PEP ID

Os03t0231700-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:6950861:6956156:-1 gene:Os03g0231700 transcript:Os03t0231700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to squalene monooxygenase. (Os03t0231700-01);Similar to Squalene monooxygenase 2 (EC 1.14.99.7). (Os03t0231700-02)
Sequence

MDAVAGAGQLVGLAAATLLTAAFLVAVKMGWRRRRRQREVAPEGGCRVVGGDGGDRTDIV
IVGAGVAGSALAYTLGKDGRRVHVIERDMTEPDRIVGELLQPGGYLKLMELGLEDCVEEI
DAQRVLGYALLKDGRNTKLSYPLEKFHSDVAGRSFHNGRFIQKMRQKAASLPNVHLEQGT
VTSLLEEGGTVKGVQYKTKSGEELKAYAPLTIVCDGCFSNLRRVLCSPKVDVPSCFVGLV
LENCQLPHPNHGHVILANPSPILCYPISSTEIRCLVDIPGQKVPSMATGEMAKYLKTVVA
PQIPPELHDSFIAAIDKGSIRTMPNRSMPAAPLPTPGALLMGDAFNMRHPLTGGGMTVAF
SDIVVLRNLLKPLGNLHDAPSLCKYLESFYTLRKPVASTINTLAGALYKVFCASTDQAKN
EMREACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVPSPKRMW
IGARLVSGACGIIFPIIKAEGVRQMFFPATVPAYYRAPPPMESG

Transcript Sequence

Transcript ID

Os03t0231700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:6950861:6956156:-1 gene:Os03g0231700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to squalene monooxygenase. (Os03t0231700-01);Similar to Squalene monooxygenase 2 (EC 1.14.99.7). (Os03t0231700-02)
Sequence

AGTCTCCCGTCACCTCGCTTGCACTTCTCTAAGCTTCCACCCACCCACGTACGTACGCAC
GCAGAGCAGCAAGAAATGGATGCGGTCGCCGGCGCCGGGCAGCTCGTTGGCCTCGCCGCG
GCCACGCTCCTCACGGCGGCCTTCCTCGTCGCAGTGAAGATGGGGTGGCGGCGCCGCCGC
CGCCAACGGGAGGTCGCGCCGGAGGGTGGCTGCCGGGTTGTTGGCGGCGATGGGGGTGAC
CGGACGGACATCGTCATTGTTGGTGCCGGGGTCGCCGGATCTGCGCTCGCCTACACGCTC
GGAAAGGATGGGCGACGAGTGCATGTTATAGAGCGGGACATGACGGAGCCTGATAGAATT
GTTGGTGAACTGCTACAGCCTGGTGGCTATTTGAAATTGATGGAGCTGGGTCTTGAGGAT
TGTGTTGAAGAAATCGATGCTCAGCGTGTCCTTGGTTACGCATTGTTGAAAGATGGGAGA
AACACAAAGCTTTCTTATCCCTTGGAGAAGTTCCATTCAGATGTTGCTGGTAGGAGCTTT
CACAATGGACGGTTTATACAGAAGATGCGTCAAAAAGCTGCATCTTTGCCTAATGTTCAT
TTGGAGCAAGGAACCGTTACATCATTGCTCGAAGAAGGTGGCACGGTTAAGGGTGTTCAA
TACAAGACAAAGTCAGGTGAAGAATTAAAGGCCTATGCACCATTGACAATTGTATGCGAT
GGCTGTTTCTCAAACCTACGGCGTGTCCTGTGCTCTCCAAAGGTTGATGTGCCATCCTGT
TTTGTTGGGTTGGTTTTGGAGAATTGTCAACTTCCTCACCCAAACCATGGCCATGTTATC
CTGGCTAATCCTTCACCTATCCTATGTTACCCGATAAGCAGCACTGAGATTCGTTGTTTG
GTTGATATCCCTGGGCAGAAGGTGCCTTCCATGGCAACCGGTGAAATGGCAAAATATCTC
AAGACTGTGGTTGCACCTCAGATTCCTCCAGAACTCCATGATTCTTTCATTGCAGCAATT
GATAAAGGAAGCATAAGGACAATGCCAAATAGGAGTATGCCAGCTGCTCCACTTCCAACC
CCTGGCGCGCTGTTGATGGGTGATGCATTCAACATGCGACATCCTTTAACTGGTGGTGGA
ATGACCGTTGCGTTTTCTGACATTGTTGTCCTACGCAATCTTCTCAAGCCTCTCGGCAAC
CTGCACGATGCACCTTCCCTGTGCAAGTACCTTGAATCGTTCTATACACTGCGGAAGCCT
GTTGCTTCTACAATCAACACACTGGCTGGTGCTCTGTACAAGGTCTTCTGTGCCTCAACT
GACCAGGCTAAGAATGAGATGCGAGAAGCTTGCTTTGATTACTTGAGCCTTGGAGGAGTC
TTCTCAAATGGGCCTATTGCTCTTCTCTCTGGCCTCAATCCTCGGCCTCTGAGTTTAGTA
GCCCACTTCTTTGCTGTTGCTATCTATGGCGTTGGACGCCTAATGCTCCCCGTCCCTTCA
CCTAAACGCATGTGGATCGGCGCGAGACTGGTTTCCGGTGCATGTGGTATCATCTTCCCA
ATCATCAAAGCTGAAGGTGTGAGGCAAATGTTCTTCCCTGCTACAGTCCCTGCATATTAC
CGGGCCCCTCCTCCAATGGAATCCGGATAACGCATATCAATGCTATCCTGCATCGATCAT
GCCGTTTGTGTCCCCTGATCTCGGAGCTGCTGGAAGCAGAAAAAGGAACAGAAGTACCGT
GTTTGTTTCGGCATCGAACTCTTCCCTTCAAACGTCTAAATGCATGCACAGGCGATATGA
CGTACACATACATGCAGTAATTAAGCGCCGGTGGGTATTTGGATATTTGGATTAGCATAC
CCACGTGGAGGTCGTCCAAGAAAACGACCACTTAACCTCGTGTCAAAATCGGCGTGTACT
TCCGTTTCGTGTCACTGCAGCTAGAGTGGCAAATTTGGCCACTTCCCTTTCGTTGCCACT
GTGAACTGCTAGCTGCGGCTGTCCTGCTGCTACTTGCTTCACGCGTGCGTGAAAGTACAT
TAGGAGAAATCAACATCTGATGTTTATGGATTGGGAAAGGAACAACGACGTCAAGGCTGT
CACAACTTAAAATTAATTGTAAACGTTGTACATCAAAACAGTTGCCTTCAATCGGCTTTG
TGC