Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0223700-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:6468343:6476409:-1 gene:Os03g0223700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os03t0223700-01)
Sequence	ATGGCCGCCGACGCGCTCTCCATCATCCCGGGCGCCGTGCTGCGCAACCTCTCCGACAAG CTCTACGAGAAGCGGAAGAACGCCGCGCTCGAGATTGAGGGGATCGTGAAGCAGCTGGCG ACGTCGGGAGAACATGACAAGATATCAGCAGTGATCGCTCTGCTCACCAACGATTTCACC ATGTCGCCCCAAGCGAACCATCGGAAGGGCGGATTGATTGGTCTTGCAGCAGTCACGGTT GGACTCACCAGTGAGGCTGCTCAACATTTGGAGCAAATTGTGCCTCCTGTGCTTACCTCC TTCCTGGACCAAGACAGTAGAGTTCGCTACTATGCGTGTGAAGCACTATACAACATAGCA AAGGTGGTAAGAGGGGATTTCATCATCTACTTCAACAAAATTTTTGATGCATTATGCAAG CTTTCTGCAGACTCTGATGCTAACGTGCAGAGTGCTGCTCATCTTCTTGACAGGCTTGTC AAGGATATAGTAACTGAGAGTGACCAGTTCAGCATAGAAGAATTTATACCACTCTTGAGG GAGCGCATGAATGTGTTGAATCCTTATGTGAGACAATTTTTGGTGGGGTGGATAACAGTG TTAGACAGTGTGCCTGATATTGACATGCTTGGTTTCCTTCCTGATTTTCTTGATGGTTTA TTTAATATGCTGAGTGATTCCAGCCATGAGATTAGGCAGCAAGCAGATGCAGCACTTTCT GAGTTTCTGCAGGAAATTAAAAATTCACCAAATGTAGATTATGGTCGTATGGCTGAAATA CTTGTTCGGAGAGCTGGTTCTTCTGATGAATTCACTCGGTTGACGTCTATCACATGGATT AACGAGTTTGTCAAGCTTGGTGGGGAACAACTTGTTCCTTACTATGCAGATATTTTGGGA GCCATCTTGCCCTGTATTTCTGATCAAGAGGAGAAGATCAGAGTGGTTGCGCGTGAAACT AATGAGGAACTTTGTGCTATAAAAGCTGATCCAACTGAAGGATTTGATATTGGAGCCATT CTCTCAATTGCAAAGAGGGAATTGAATAGTGAACACGAGGCTACCCGGATTGAGTCATTG CATTGGTTTTCCACTCTCTTAGTTCGATATCGTGCTGAGTTCTTGGCATACTTGAATGAC ATCTTCGATCCACTCCTAAATGCACTCTCTGATCCTTCAGATGCGGTTGTTCTATTAGTG TTGGAAGTTCATGCGCGCATAGCTGAAGAGTCTCATCACTTTCATCATCTTGTATCCTAC TTAATCCACACTTTTCACAACAATCATGTTCTACTGGAGAAACGTGGCGCATTGATAGTT CGTCGACTTTGTATTCTTTTGGGTGCTGAAAAAGTTTATCGAGAGTTCTCTACTATTCTT GAGACCGAAGGTGACCTTGAATTTGCATCCACCATGGTTCAGGCCTTGAATTTAATTTTG CTCACATCAACCGAACTTGCTGAGCTGCGTTCTCTTCTTAAGAAAACATTGGTTGATTCT TGTGGCAAGGACTTATTTCAATCTTTATACGCTTCTTGGTGTCACTCTCCGATGGCTACA ATAAGCTTGTGTCTACTTGCGCAGGCATACAATCATGCAATTTCTGTTATCCAGTCTTTG GGAGAGGAAGATATAAATGTGAAGTTTCTCGTGCAACTAGACAAATTAATCCGTCTTTTA GAGACTCCTGTATTTGCTTACTTACGTTTGCAGCTTCTTGAGCCTGGAAAACATACCTGG CTTCTCAAAACACTTTATGGTCTCCTGATGCTACTGCCTCAGCAAAGTGCAGCCTTCAAG ATCTTGAGAACTCGGCTGAAGACTGTGCCTTTCAGTGAAAATTTGAAACGCACATCTTCA ACAAATCCATACTCTCAGATTCTACAAGTGACAGAAGATGGTAATCGAAATCACGACACT CAGAGCTACAATGCAATCAATTTCCCATCCCGGCTCCACCAGTTTGAGAGCATGCAGCAG CAGCACAGAGTTCATCTAAAGAATCAACTGCAATCCCAAAAATCTGCTTCAGCTATAGTA TTATCACAGGAAATTCAAAGATACGAAGAAGCACATTCCTCTTCGACATCAGAGATTGGC AGGCCCCCTTCGAGAACATCCAGAGGCATTTCATGA

Peptide Sequence

PEP ID	Os03t0223700-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:6468343:6476409:-1 gene:Os03g0223700 transcript:Os03t0223700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os03t0223700-01)
Sequence	MAADALSIIPGAVLRNLSDKLYEKRKNAALEIEGIVKQLATSGEHDKISAVIALLTNDFT MSPQANHRKGGLIGLAAVTVGLTSEAAQHLEQIVPPVLTSFLDQDSRVRYYACEALYNIA KVVRGDFIIYFNKIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLR ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADAALS EFLQEIKNSPNVDYGRMAEILVRRAGSSDEFTRLTSITWINEFVKLGGEQLVPYYADILG AILPCISDQEEKIRVVARETNEELCAIKADPTEGFDIGAILSIAKRELNSEHEATRIESL HWFSTLLVRYRAEFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSY LIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLIL LTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSL GEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFK ILRTRLKTVPFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQ QHRVHLKNQLQSQKSASAIVLSQEIQRYEEAHSSSTSEIGRPPSRTSRGIS

Transcript Sequence

Transcript ID	Os03t0223700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:6468343:6476409:-1 gene:Os03g0223700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os03t0223700-01)
Sequence	GCAGCCGCGCCCGGATCCCCACCTCCTCCTCCCCCTCCTCCTCCAGATCACACCACCGTC GTCTCCAACCTCCAATCCATTGAGATAGGCTTCGCCAGGGTGCCCCGCGAGCGAGCGGAG GTGGGCTTAGGTCTCTAGGGTTTGGCGGGGCGCACCCCCTCGTGGTCTCTCGTCGTCGCC TTCGCCTGTTCGGGGGGCTAGGGTTGCGTCGACGGTGGGGGGTGGGGGTGCGGGTGCGGG GGGCGGGCGGTCGATGCGGCGATCGCGGGCGATCGGGAGGGTGTAGCGGCGGCAGGGGAG GGGGGATCTCCTTGGCGGTTTGTTCGGAGATGGCCGCCGACGCGCTCTCCATCATCCCGG GCGCCGTGCTGCGCAACCTCTCCGACAAGCTCTACGAGAAGCGGAAGAACGCCGCGCTCG AGATTGAGGGGATCGTGAAGCAGCTGGCGACGTCGGGAGAACATGACAAGATATCAGCAG TGATCGCTCTGCTCACCAACGATTTCACCATGTCGCCCCAAGCGAACCATCGGAAGGGCG GATTGATTGGTCTTGCAGCAGTCACGGTTGGACTCACCAGTGAGGCTGCTCAACATTTGG AGCAAATTGTGCCTCCTGTGCTTACCTCCTTCCTGGACCAAGACAGTAGAGTTCGCTACT ATGCGTGTGAAGCACTATACAACATAGCAAAGGTGGTAAGAGGGGATTTCATCATCTACT TCAACAAAATTTTTGATGCATTATGCAAGCTTTCTGCAGACTCTGATGCTAACGTGCAGA GTGCTGCTCATCTTCTTGACAGGCTTGTCAAGGATATAGTAACTGAGAGTGACCAGTTCA GCATAGAAGAATTTATACCACTCTTGAGGGAGCGCATGAATGTGTTGAATCCTTATGTGA GACAATTTTTGGTGGGGTGGATAACAGTGTTAGACAGTGTGCCTGATATTGACATGCTTG GTTTCCTTCCTGATTTTCTTGATGGTTTATTTAATATGCTGAGTGATTCCAGCCATGAGA TTAGGCAGCAAGCAGATGCAGCACTTTCTGAGTTTCTGCAGGAAATTAAAAATTCACCAA ATGTAGATTATGGTCGTATGGCTGAAATACTTGTTCGGAGAGCTGGTTCTTCTGATGAAT TCACTCGGTTGACGTCTATCACATGGATTAACGAGTTTGTCAAGCTTGGTGGGGAACAAC TTGTTCCTTACTATGCAGATATTTTGGGAGCCATCTTGCCCTGTATTTCTGATCAAGAGG AGAAGATCAGAGTGGTTGCGCGTGAAACTAATGAGGAACTTTGTGCTATAAAAGCTGATC CAACTGAAGGATTTGATATTGGAGCCATTCTCTCAATTGCAAAGAGGGAATTGAATAGTG AACACGAGGCTACCCGGATTGAGTCATTGCATTGGTTTTCCACTCTCTTAGTTCGATATC GTGCTGAGTTCTTGGCATACTTGAATGACATCTTCGATCCACTCCTAAATGCACTCTCTG ATCCTTCAGATGCGGTTGTTCTATTAGTGTTGGAAGTTCATGCGCGCATAGCTGAAGAGT CTCATCACTTTCATCATCTTGTATCCTACTTAATCCACACTTTTCACAACAATCATGTTC TACTGGAGAAACGTGGCGCATTGATAGTTCGTCGACTTTGTATTCTTTTGGGTGCTGAAA AAGTTTATCGAGAGTTCTCTACTATTCTTGAGACCGAAGGTGACCTTGAATTTGCATCCA CCATGGTTCAGGCCTTGAATTTAATTTTGCTCACATCAACCGAACTTGCTGAGCTGCGTT CTCTTCTTAAGAAAACATTGGTTGATTCTTGTGGCAAGGACTTATTTCAATCTTTATACG CTTCTTGGTGTCACTCTCCGATGGCTACAATAAGCTTGTGTCTACTTGCGCAGGCATACA ATCATGCAATTTCTGTTATCCAGTCTTTGGGAGAGGAAGATATAAATGTGAAGTTTCTCG TGCAACTAGACAAATTAATCCGTCTTTTAGAGACTCCTGTATTTGCTTACTTACGTTTGC AGCTTCTTGAGCCTGGAAAACATACCTGGCTTCTCAAAACACTTTATGGTCTCCTGATGC TACTGCCTCAGCAAAGTGCAGCCTTCAAGATCTTGAGAACTCGGCTGAAGACTGTGCCTT TCAGTGAAAATTTGAAACGCACATCTTCAACAAATCCATACTCTCAGATTCTACAAGTGA CAGAAGATGGTAATCGAAATCACGACACTCAGAGCTACAATGCAATCAATTTCCCATCCC GGCTCCACCAGTTTGAGAGCATGCAGCAGCAGCACAGAGTTCATCTAAAGAATCAACTGC AATCCCAAAAATCTGCTTCAGCTATAGTATTATCACAGGAAATTCAAAGATACGAAGAAG CACATTCCTCTTCGACATCAGAGATTGGCAGGCCCCCTTCGAGAACATCCAGAGGCATTT CATGATGCATTTTGGTTGATTGTGATGTATTATACATTTGCAAGACGCATCGTCACAAAT TTGTTGGGGCTTTGGTTAGTCTCCTTTATTTTTTTTTCAAAGGAGGTTCATAGGGTACAT AGAGTGTAATCTTTTTGTTTGGTTCCTAGATTTTTGTCATGGGATGGCAATTATTTGTTG GAGAAAGCTCGTTTCCCTCTTTCAGCTATTATTTTCCCTTTTCTTTTAGCTGTTTCACTG CTCATGTGGTTTCTGTAATTTTTCAATTGAAGGCCAATGAGCAAAATAGTATTTGGAGAT ATGTCACGACTGTTCTGCTTATCAATCTCCAATAAATTAGTGATGCAATGTAAATTTTTG TTCCTAGCTCTTGTGATCCACGCCATCTGTAATTTTCTACCACATGATAATCGTGAACTT TTAAAATTGGTAATTTACTTCTT