Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0221800-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:6380281:6388758:-1 gene:Os03g0221800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Leucine Rich Repeat family protein, expressed. (Os03t0221800-01)
Sequence	ATGGCGGCTGGCCGTGCGGGGGGCGCGCCGCCGGTCACCGGCGACCGCTACCTCGACTTG CTGGTCCGCTTCGTGGGCCGCAACGCCGGGGCGCTGCTCGACGGCTCCGTCACCCTGCGA CTCCACCCCGTGGGGCTCCACTACGTCGCCTCCCGCCTCGAGGCGCTGCGGGAGCTGGAG GCGGTCGGCGCCGGCGCGCCCGTCGACTACCTCCGCGCCTACGTCGCCGACCTCGGCGAC CACCGCGCGCTCGAGCAGCTCCGCCGGATCCTGCGCCTGCTCACGTCGCTCAAGGTCGTG GCCCCCGGGCCGGGGCGGGACCCGGCGCCGCTATCACTCGTGCCGTTCGCGCGCCTGCGC GTGCTCGAGCTGCGTGGGTGCGACCTCTCCACCTCCTCCGCCGCCAGGGGCCTGCTCGAC CTCCGCCACACCCTCGAGAAGCTCATCTGTTACAATTCCACGGATGCTCTTAGGCATATC TTCACGAGCAGGATCATGGATATCAAGGACTCACCCGTATGGGGTCGGCTGTTGTATGTA TCATGTGCTTCAAATGGTCTGGTGCTCATGGATGAGTCATTGCAGTTGTTACCTGCAGTT GAAACCCTTGATCTTAGTCGGAACCAGTTTGCAAAGGTGGATAATCTGCGGAAATGCACA AAGCTACGAAATCTAGATCTTGGATTTAATCATTTGCGCTCTATATCATCCTTGAGTGAG GCTTGCGGTCGAATTGTGCAACTTGTACTGAGAAATAATGCTTTAACTACACTACATGGG ATCAAAAATCTAAAGTCGCTTATGGACCTTGATCTGTCTTACAACATCATCTCAAATTTC TCGGAGCTGGAAATACTTGGTAGCCTTTTTTTGCTACAGAACCTATGGTTGGAAGGCAAC CCAATCTGCTGTGCTCGTTGGTATCGAGCACGTGTTTTCAGTTTTCTCCACAACTCAGAA AGTTTGAAGTTAGATGATAAAGGTATGAACACACAGGAGTACTGGGAAAAACAAGTACTG TTTTCAAGCAGGCAAAAGCAACCTGCTGGCTATGGATTTTATTTTCCTGCAAAAGATGAC CATGAGGATGAAGACACATCAAATTCAAAGATGAAAAAGATTTCTCGACTTGCCTTAATT GTGGAGGAAGAGAGAAGTCTTTGTGATGAAGGTGTGGACCAGCAGACCACCCCCCACGAA AGTGACAGTTCTAAGAAGGATGAAGTTGCAGGTGCTGATAATGACATAAAAATTACTTCG TTGATCAATACAGCTGAATTATTGAAGAAAGAGAAATCAACTGATTGGCTGCGTGAATTT AAGGAGTGGATGGATGAAAACATGGAGAATACAGAACCTGACAACCTTTACATAGAGTTC AACAGTAGCAATGGAAGGTATGAGGAACAAAAGAAAATGCAGAAAGCTCAAAAGAACTCA AAGGACATCTCAGACTTGGTACAGACGTCAGAAGGTGGGAGCAGCTCAAACATTTTGGAA TCTGACTTATCTTTCACTGATGGTGCATGTTACAGTGCTAATGGTGTTACCACAGAATCC TCACATGAAGGGAATATATACCAGGCTCCTTTAAAGTTGCACTTGAATTCTTCCCAGCAA CTTCCTCCACTAAATTTTGTAGCCATTTCGCATGCTGATTCTTTTTGTGAGATGGAAGAT GGCACTGGAAACTTACATACAAATGGAGTTTCATCAAATTTGATGAACAAGCTGGTAGAA CCGAGTCTATCCTTCACAAATTCTAGTCCGCAGTCACCCCCACAATACAAGGAGGACATT CTGCATCGAAGACTTTGTATGGAGGAAGAGGTTTTGCAGACTTCGGGAGACTTTAATTGT GCTGGTTCGCTTGGTAGTGGTAGCAGTTGCAGTGATGACTCTTCAGGTGATTTATGTTCA TGCAATTCCGAAGATGATTGTGTTGCAATTCGAACAAAAATGGAGTTGTCCCCCAATGGT CAAATAGCTAGGTTTTCTTCTGTAGGTGATTATGAGGAAAAGGATGGAATGGAATATTTT TCTGGGAAGAAAGGTTTGCCTGATTATTCAGCAGAGGATGTCCCAAATTTTACAGATTCC GTTGAGTTTGGTATTAAGCAGTTACATGATAGGTACAAGAGCAATGGGCATTTAGGAGAA GGTTCAGATCATTTGGTCAGACAACAGAGTAACCAGAAGTTTAAGATGAGGATACCTCCT CTTTTTAAGAATCATAATGGCACTAAACTTGTATTTCCGAAGGTCAATGGAGATGAAATG GATAATGGGGTTTCAGTTGCAGGGAACGGCCATCTGGGATGCAACCTGAACAACTGTACT CTTTGCAGGGAACACAGCTTAGAAAACCATAATTCAAGTATCTTGCACAAGGATAACTTA TGTGCCAGTGCCAATACAGTTTCTTGTAACACTGAAAAGTACAAGCTTATTGAGGATTTC TTCAATTTAGAAATTGCAAGCGACGCATCTGAAATTTGTGAAAAGACAGCCTTTTGTGGA TACATATTTCAAAATGGCACTGGAAGTGATTTGGTTCAAAGAGAGGTAGCCTTGCTGCGA TGTTCTCAAAATAAACTACATGTTGTGCTAGTTGATATGGCTCAAGATGGACAAGACACT ATGCTAAGAGTTTTGGGCAGCTATTGGATGGAAGATCTGGAGAATATTTTGATCGGACTG GGTCTACAAGCATTGAGGGTACACATGGCAGATAATACAACTCACCTATTCTTGACAAGG ACTTCCAAGGAAGCAGAAGATATACTTTGGCTCTTAACCGCGTCTAATTTTCCACAATTA ACTAGTAGTATATCTTTGCAAAGCTGGGAGAAGGTCCAACTTAAATTGCTTGAGAATTGT ATCCATCCAAGTTTGGAAATGGGAATATTTCTCTACTCGTTGTTGATGTTTTGGAAGAAT GATACTGAAGAAGGATCCTTTGTTATTAGATCCCTCGCTGTTACTGAAGGGTCATTATTT GTGTGTATCGAGAACATACATCAGTTTGGTTCCCTCCCTGATGATCCGGATACTCCATAT TTTTCTCTGGATGCTTGTTGTTTTATCAACGATATTCAAGAAGTGGTTGTGGATCACTGT GACAAGAGATGTTTGACATTAGTTTTGGACAACCATGCACATGAAGGAAGATTTTGCAGT AACGGTAGCATTACAAATTCACAGAGCAAGCAACCAGATGAAATTTACACAGTGCATACA TGGAAACTCAAGTGGTTCTCTGAAGAAACAGTTGTGAAGTTCATTTCTTTACTTAAAGCT CTTTACTCTGTATCATCATCTTCATCTTTACCTGTAAAGTGTACATCTTGA

Peptide Sequence

PEP ID	Os03t0221800-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:6380281:6388758:-1 gene:Os03g0221800 transcript:Os03t0221800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Leucine Rich Repeat family protein, expressed. (Os03t0221800-01)
Sequence	MAAGRAGGAPPVTGDRYLDLLVRFVGRNAGALLDGSVTLRLHPVGLHYVASRLEALRELE AVGAGAPVDYLRAYVADLGDHRALEQLRRILRLLTSLKVVAPGPGRDPAPLSLVPFARLR VLELRGCDLSTSSAARGLLDLRHTLEKLICYNSTDALRHIFTSRIMDIKDSPVWGRLLYV SCASNGLVLMDESLQLLPAVETLDLSRNQFAKVDNLRKCTKLRNLDLGFNHLRSISSLSE ACGRIVQLVLRNNALTTLHGIKNLKSLMDLDLSYNIISNFSELEILGSLFLLQNLWLEGN PICCARWYRARVFSFLHNSESLKLDDKGMNTQEYWEKQVLFSSRQKQPAGYGFYFPAKDD HEDEDTSNSKMKKISRLALIVEEERSLCDEGVDQQTTPHESDSSKKDEVAGADNDIKITS LINTAELLKKEKSTDWLREFKEWMDENMENTEPDNLYIEFNSSNGRYEEQKKMQKAQKNS KDISDLVQTSEGGSSSNILESDLSFTDGACYSANGVTTESSHEGNIYQAPLKLHLNSSQQ LPPLNFVAISHADSFCEMEDGTGNLHTNGVSSNLMNKLVEPSLSFTNSSPQSPPQYKEDI LHRRLCMEEEVLQTSGDFNCAGSLGSGSSCSDDSSGDLCSCNSEDDCVAIRTKMELSPNG QIARFSSVGDYEEKDGMEYFSGKKGLPDYSAEDVPNFTDSVEFGIKQLHDRYKSNGHLGE GSDHLVRQQSNQKFKMRIPPLFKNHNGTKLVFPKVNGDEMDNGVSVAGNGHLGCNLNNCT LCREHSLENHNSSILHKDNLCASANTVSCNTEKYKLIEDFFNLEIASDASEICEKTAFCG YIFQNGTGSDLVQREVALLRCSQNKLHVVLVDMAQDGQDTMLRVLGSYWMEDLENILIGL GLQALRVHMADNTTHLFLTRTSKEAEDILWLLTASNFPQLTSSISLQSWEKVQLKLLENC IHPSLEMGIFLYSLLMFWKNDTEEGSFVIRSLAVTEGSLFVCIENIHQFGSLPDDPDTPY FSLDACCFINDIQEVVVDHCDKRCLTLVLDNHAHEGRFCSNGSITNSQSKQPDEIYTVHT WKLKWFSEETVVKFISLLKALYSVSSSSSLPVKCTS

Transcript Sequence

Transcript ID	Os03t0221800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:6380281:6388758:-1 gene:Os03g0221800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Leucine Rich Repeat family protein, expressed. (Os03t0221800-01)
Sequence	GAAACTTGCCAGTTACCCACTGGCAACCGCGCGGCCTGGCTGCACGGCCGCACCCCGTCG CCTTCCGTTCCCTCCCCCACGAGCCCGCGTGTCCCCAATCATACTAGCGCGGCCGTGTCC GTTTCCTCCTCCGTCGCCACCACCACCACCACCACCTCTTCCCTCCCCGGCGTCCGCTCC GCCCCCATTCGCCGATGCGGCGGGTCCCCAAACCCTAGCCCGATCCCGACGGCGGCGATG GCGGCTGGCCGTGCGGGGGGCGCGCCGCCGGTCACCGGCGACCGCTACCTCGACTTGCTG GTCCGCTTCGTGGGCCGCAACGCCGGGGCGCTGCTCGACGGCTCCGTCACCCTGCGACTC CACCCCGTGGGGCTCCACTACGTCGCCTCCCGCCTCGAGGCGCTGCGGGAGCTGGAGGCG GTCGGCGCCGGCGCGCCCGTCGACTACCTCCGCGCCTACGTCGCCGACCTCGGCGACCAC CGCGCGCTCGAGCAGCTCCGCCGGATCCTGCGCCTGCTCACGTCGCTCAAGGTCGTGGCC CCCGGGCCGGGGCGGGACCCGGCGCCGCTATCACTCGTGCCGTTCGCGCGCCTGCGCGTG CTCGAGCTGCGTGGGTGCGACCTCTCCACCTCCTCCGCCGCCAGGGGCCTGCTCGACCTC CGCCACACCCTCGAGAAGCTCATCTGTTACAATTCCACGGATGCTCTTAGGCATATCTTC ACGAGCAGGATCATGGATATCAAGGACTCACCCGTATGGGGTCGGCTGTTGTATGTATCA TGTGCTTCAAATGGTCTGGTGCTCATGGATGAGTCATTGCAGTTGTTACCTGCAGTTGAA ACCCTTGATCTTAGTCGGAACCAGTTTGCAAAGGTGGATAATCTGCGGAAATGCACAAAG CTACGAAATCTAGATCTTGGATTTAATCATTTGCGCTCTATATCATCCTTGAGTGAGGCT TGCGGTCGAATTGTGCAACTTGTACTGAGAAATAATGCTTTAACTACACTACATGGGATC AAAAATCTAAAGTCGCTTATGGACCTTGATCTGTCTTACAACATCATCTCAAATTTCTCG GAGCTGGAAATACTTGGTAGCCTTTTTTTGCTACAGAACCTATGGTTGGAAGGCAACCCA ATCTGCTGTGCTCGTTGGTATCGAGCACGTGTTTTCAGTTTTCTCCACAACTCAGAAAGT TTGAAGTTAGATGATAAAGGTATGAACACACAGGAGTACTGGGAAAAACAAGTACTGTTT TCAAGCAGGCAAAAGCAACCTGCTGGCTATGGATTTTATTTTCCTGCAAAAGATGACCAT GAGGATGAAGACACATCAAATTCAAAGATGAAAAAGATTTCTCGACTTGCCTTAATTGTG GAGGAAGAGAGAAGTCTTTGTGATGAAGGTGTGGACCAGCAGACCACCCCCCACGAAAGT GACAGTTCTAAGAAGGATGAAGTTGCAGGTGCTGATAATGACATAAAAATTACTTCGTTG ATCAATACAGCTGAATTATTGAAGAAAGAGAAATCAACTGATTGGCTGCGTGAATTTAAG GAGTGGATGGATGAAAACATGGAGAATACAGAACCTGACAACCTTTACATAGAGTTCAAC AGTAGCAATGGAAGGTATGAGGAACAAAAGAAAATGCAGAAAGCTCAAAAGAACTCAAAG GACATCTCAGACTTGGTACAGACGTCAGAAGGTGGGAGCAGCTCAAACATTTTGGAATCT GACTTATCTTTCACTGATGGTGCATGTTACAGTGCTAATGGTGTTACCACAGAATCCTCA CATGAAGGGAATATATACCAGGCTCCTTTAAAGTTGCACTTGAATTCTTCCCAGCAACTT CCTCCACTAAATTTTGTAGCCATTTCGCATGCTGATTCTTTTTGTGAGATGGAAGATGGC ACTGGAAACTTACATACAAATGGAGTTTCATCAAATTTGATGAACAAGCTGGTAGAACCG AGTCTATCCTTCACAAATTCTAGTCCGCAGTCACCCCCACAATACAAGGAGGACATTCTG CATCGAAGACTTTGTATGGAGGAAGAGGTTTTGCAGACTTCGGGAGACTTTAATTGTGCT GGTTCGCTTGGTAGTGGTAGCAGTTGCAGTGATGACTCTTCAGGTGATTTATGTTCATGC AATTCCGAAGATGATTGTGTTGCAATTCGAACAAAAATGGAGTTGTCCCCCAATGGTCAA ATAGCTAGGTTTTCTTCTGTAGGTGATTATGAGGAAAAGGATGGAATGGAATATTTTTCT GGGAAGAAAGGTTTGCCTGATTATTCAGCAGAGGATGTCCCAAATTTTACAGATTCCGTT GAGTTTGGTATTAAGCAGTTACATGATAGGTACAAGAGCAATGGGCATTTAGGAGAAGGT TCAGATCATTTGGTCAGACAACAGAGTAACCAGAAGTTTAAGATGAGGATACCTCCTCTT TTTAAGAATCATAATGGCACTAAACTTGTATTTCCGAAGGTCAATGGAGATGAAATGGAT AATGGGGTTTCAGTTGCAGGGAACGGCCATCTGGGATGCAACCTGAACAACTGTACTCTT TGCAGGGAACACAGCTTAGAAAACCATAATTCAAGTATCTTGCACAAGGATAACTTATGT GCCAGTGCCAATACAGTTTCTTGTAACACTGAAAAGTACAAGCTTATTGAGGATTTCTTC AATTTAGAAATTGCAAGCGACGCATCTGAAATTTGTGAAAAGACAGCCTTTTGTGGATAC ATATTTCAAAATGGCACTGGAAGTGATTTGGTTCAAAGAGAGGTAGCCTTGCTGCGATGT TCTCAAAATAAACTACATGTTGTGCTAGTTGATATGGCTCAAGATGGACAAGACACTATG CTAAGAGTTTTGGGCAGCTATTGGATGGAAGATCTGGAGAATATTTTGATCGGACTGGGT CTACAAGCATTGAGGGTACACATGGCAGATAATACAACTCACCTATTCTTGACAAGGACT TCCAAGGAAGCAGAAGATATACTTTGGCTCTTAACCGCGTCTAATTTTCCACAATTAACT AGTAGTATATCTTTGCAAAGCTGGGAGAAGGTCCAACTTAAATTGCTTGAGAATTGTATC CATCCAAGTTTGGAAATGGGAATATTTCTCTACTCGTTGTTGATGTTTTGGAAGAATGAT ACTGAAGAAGGATCCTTTGTTATTAGATCCCTCGCTGTTACTGAAGGGTCATTATTTGTG TGTATCGAGAACATACATCAGTTTGGTTCCCTCCCTGATGATCCGGATACTCCATATTTT TCTCTGGATGCTTGTTGTTTTATCAACGATATTCAAGAAGTGGTTGTGGATCACTGTGAC AAGAGATGTTTGACATTAGTTTTGGACAACCATGCACATGAAGGAAGATTTTGCAGTAAC GGTAGCATTACAAATTCACAGAGCAAGCAACCAGATGAAATTTACACAGTGCATACATGG AAACTCAAGTGGTTCTCTGAAGAAACAGTTGTGAAGTTCATTTCTTTACTTAAAGCTCTT TACTCTGTATCATCATCTTCATCTTTACCTGTAAAGTGTACATCTTGATATGTTGGTTCT TGTAGTTACATAGTGATATTCGTTCATTCTTTGGGGTTGTATTTAGTTCTTAATCTGTAT AGGTTGTTACTAGTTGCCCGTGTAGATATATGCTTCTTATGCCCTTTGTAGTTATCAGAA AATTTTCCCATCTAAAAATTGTACATAACAGAATTATAGTGAGTGTGGAGGAGTGGATCT GCAATTTTGTCAA